Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3i11
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 31 0.19
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 29 1.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.3
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 4.1
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 4.1
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|... 26 5.4
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 26 7.1
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 26 7.1
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.1 bits (67), Expect = 0.19
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 287 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 430
P P ++P V P +PV P T++ + P ++P +VP S
Sbjct: 221 PPQPAVAPSVSAVVPNLPVHPATAINAQSQSGNPLSNPLFQPSNVPQS 268
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 28.7 bits (61), Expect = 1.0
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 269 VKHQRWPKPPELSPIYLPVSPVMPVQPLT---SLTLTQTASGPETSPAS 406
VKH P PP P+ +SP MP PLT S T S PE+ P S
Sbjct: 740 VKHH--PPPP---PVRSSISPSMPPAPLTHANSSTPMNYVSQPESPPQS 783
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 106 NQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI-LKDMASQGDYASQ 273
NQ S D+D+ ASS++S A D+D N+ +A GD +SQ
Sbjct: 3 NQSSSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQ 59
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 565 ILASSDSSFLNEEYCIVKRLYNSRNSQSNNIAAYITAHLLPPVAQVFHQSAGSITDLLRG 744
+++SS+ V +YNS + ++ I + + A + + V S SI DL+
Sbjct: 35 LISSSNLESCQSSPLEVGNIYNS--TSASEILSTLDAKYITIIG-VIGSSNSSIQDLIDS 91
Query: 745 VGNGNDA 765
VGN N+A
Sbjct: 92 VGNSNNA 98
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 4.1
Identities = 21/87 (24%), Positives = 34/87 (39%)
Frame = +2
Query: 185 TSMTLTKASPSSTFKRS*RTWPARAIMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLT 364
+S +KA+ FK + ++ V+ P PP + P LP P M + +
Sbjct: 390 SSAVFSKATAEPAFKSAMAIPDMPSMPHVQGFPAPFPPFMMP-GLPQMPPMMMNAIAGQV 448
Query: 365 LTQTASGPETSPASDNLSVPSSDTWDK 445
+ P T+ N SVP + K
Sbjct: 449 YHNNRNPPRTNSRPSNASVPPPSSLHK 475
>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +1
Query: 76 SAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQ 255
S +PSV+I +EIP + + + A DY+ T I++V ++ + S
Sbjct: 80 SVEISPSVSIQNRETDEIPSFLTSALQDLLNALAVDYLKFTPSKAWIIHVDAVV--ILSS 137
Query: 256 GDYASQASAVAQTA 297
Y + SA++ A
Sbjct: 138 SPYENILSALSLAA 151
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 248 PARAIMQVKHQRWPKPPELSPIYLP--VSPVMPVQPLTSLTLTQTASGPETSPASDNLSV 421
P +M + +Q P + P +PV P QPL L + T P + + L++
Sbjct: 258 PFEQMMAMTNQGMSVSPGVETTSSPFFTAPVEPNQPLQPLRPSMTGPVPSSMGSEATLNM 317
Query: 422 PSS 430
PS+
Sbjct: 318 PST 320
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +1
Query: 514 GCAGGGRIYDFEAAW--DAILASSDSSFLNEEYCIVKRLYNSRNSQSNNIAAYITAHLLP 687
GC+G ++ + D + SS + +EE + + ++IAA AH+L
Sbjct: 581 GCSGYPKLLSTAVSMFEDLVRYSSHLQYYSEECSLSSESLGNSPQAFSSIAAIAAAHILD 640
Query: 688 PVAQVFHQ 711
+F++
Sbjct: 641 KALSIFNE 648
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,425
Number of Sequences: 5004
Number of extensions: 56428
Number of successful extensions: 223
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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