Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3i10
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14745-2|AAA27922.2|  461|Caenorhabditis elegans Hypothetical pr...    53   3e-07
L14745-1|AAM15540.1|  466|Caenorhabditis elegans Hypothetical pr...    53   3e-07
U29613-3|AAC47062.2|  483|Caenorhabditis elegans Hypothetical pr...    45   7e-05
AC024809-3|AAF59541.3|  455|Caenorhabditis elegans Hypothetical ...    34   0.10 
U13875-10|AAA21159.1|  332|Caenorhabditis elegans F-box synaptic...    31   1.2  
AF040643-6|AAT81200.1|  249|Caenorhabditis elegans Hypothetical ...    30   2.2  
Z82282-4|CAB05276.1|  485|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U64849-1|AAC48052.3|  936|Caenorhabditis elegans Daf-12, redunda...    29   2.9  
AC006714-11|AAN65282.3|  306|Caenorhabditis elegans F-box a prot...    29   3.8  
Z48809-8|CAA88748.2|  535|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z48795-8|CAA88732.2|  535|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z22179-17|CAA80171.2|  691|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z22173-3|CAA80127.2|  691|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>L14745-2|AAA27922.2|  461|Caenorhabditis elegans Hypothetical
           protein C02F5.7a protein.
          Length = 461

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 48/176 (27%), Positives = 71/176 (40%), Gaps = 8/176 (4%)
 Frame = +1

Query: 271 PTEPQGTHISRLYP-ELLALIFERLPVRDRGRAAQVCRAWRDAADRRSVWRGVEAALHLR 447
           P +   + I+R+ P E+L  +F  L  +   R+AQVCR+W   A   S W+ V+     R
Sbjct: 48  PAQVDNSLINRVLPKEVLLKVFSFLDTKALCRSAQVCRSWSILALDGSNWQRVDLFTFQR 107

Query: 448 RPAPVLFASLARRGVRKLQVLSLR-------RGLRDAVAXXXXXXXXXXXXCYSVTDXXX 606
                +  +LARR    L+ LSL+         LR   +            C  VTD   
Sbjct: 108 DVKTAVVENLARRCGGFLKELSLKGCENVHDSALRTFTSRCPNLEHLSLYRCKRVTD-AS 166

Query: 607 XXXXXXXXXXXKRLDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 774
                        L+L  C  +TD ++  I     NL  L +  C  I D G+ +I
Sbjct: 167 CENLGRYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSYLNISWCDAIQDRGVQII 222



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +1

Query: 646 LDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWG 783
           L +S C Q++D SL  + Q   NL+ LEL GC  + D G + +A G
Sbjct: 284 LCMSNCNQISDRSLVSLGQHSHNLKVLELSGCTLLGDNGFIPLARG 329



 Score = 31.9 bits (69), Expect = 0.54
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 640 KRLDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIA 777
           +RLD+  C  ++D ++  +A +   L EL L  C  ITD  +  +A
Sbjct: 334 ERLDMEDCSLISDHTINSLANNCTALRELSLSHCELITDESIQNLA 379



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +1

Query: 580 CYSVTDXXXXXXXXXXXXXXKRLDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDT 759
           C  +TD                L+L  C Q+TDS+L  + +  K L+ ++L  C N++  
Sbjct: 367 CELITDESIQNLASKHRETLNVLELDNCPQLTDSTLSHL-RHCKALKRIDLYDCQNVSKE 425

Query: 760 GLL 768
            ++
Sbjct: 426 AIV 428


>L14745-1|AAM15540.1|  466|Caenorhabditis elegans Hypothetical
           protein C02F5.7b protein.
          Length = 466

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 48/176 (27%), Positives = 71/176 (40%), Gaps = 8/176 (4%)
 Frame = +1

Query: 271 PTEPQGTHISRLYP-ELLALIFERLPVRDRGRAAQVCRAWRDAADRRSVWRGVEAALHLR 447
           P +   + I+R+ P E+L  +F  L  +   R+AQVCR+W   A   S W+ V+     R
Sbjct: 48  PAQVDNSLINRVLPKEVLLKVFSFLDTKALCRSAQVCRSWSILALDGSNWQRVDLFTFQR 107

Query: 448 RPAPVLFASLARRGVRKLQVLSLR-------RGLRDAVAXXXXXXXXXXXXCYSVTDXXX 606
                +  +LARR    L+ LSL+         LR   +            C  VTD   
Sbjct: 108 DVKTAVVENLARRCGGFLKELSLKGCENVHDSALRTFTSRCPNLEHLSLYRCKRVTD-AS 166

Query: 607 XXXXXXXXXXXKRLDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 774
                        L+L  C  +TD ++  I     NL  L +  C  I D G+ +I
Sbjct: 167 CENLGRYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSYLNISWCDAIQDRGVQII 222



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +1

Query: 646 LDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWG 783
           L +S C Q++D SL  + Q   NL+ LEL GC  + D G + +A G
Sbjct: 284 LCMSNCNQISDRSLVSLGQHSHNLKVLELSGCTLLGDNGFIPLARG 329



 Score = 31.9 bits (69), Expect = 0.54
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 640 KRLDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIA 777
           +RLD+  C  ++D ++  +A +   L EL L  C  ITD  +  +A
Sbjct: 334 ERLDMEDCSLISDHTINSLANNCTALRELSLSHCELITDESIQNLA 379



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +1

Query: 580 CYSVTDXXXXXXXXXXXXXXKRLDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDT 759
           C  +TD                L+L  C Q+TDS+L  + +  K L+ ++L  C N++  
Sbjct: 367 CELITDESIQNLASKHRETLNVLELDNCPQLTDSTLSHL-RHCKALKRIDLYDCQNVSKE 425

Query: 760 GLL 768
            ++
Sbjct: 426 AIV 428


>U29613-3|AAC47062.2|  483|Caenorhabditis elegans Hypothetical
           protein K02A6.3a protein.
          Length = 483

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 18/36 (50%), Positives = 26/36 (72%)
 Frame = +1

Query: 313 ELLALIFERLPVRDRGRAAQVCRAWRDAADRRSVWR 420
           ELL  IF+RLPV+++GR +QVCR W+   + +  WR
Sbjct: 13  ELLEDIFQRLPVKNKGRCSQVCRQWQRGFNSKLSWR 48


>AC024809-3|AAF59541.3|  455|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.8 protein.
          Length = 455

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +1

Query: 646 LDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLL 768
           L L+  + V D  +GRI   L NLE L+L GC  I+  GL+
Sbjct: 204 LRLANSEYVDDWCIGRIGGLLPNLEMLDLSGCHRISSKGLM 244


>U13875-10|AAA21159.1|  332|Caenorhabditis elegans F-box synaptic
           protein protein 1 protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 238 PHLPSAHVSEPPTEPQGTHISRLYPELLALIFERLPVRDRGRAAQVCRAWRDA 396
           PH         P  P+    SRL  ++L  IF+ LP++D   A   C +W +A
Sbjct: 64  PHSIPPRRRRSPRRPE-VSASRLPLKVLNQIFQYLPLKDLRSAMLTCHSWNNA 115


>AF040643-6|AAT81200.1|  249|Caenorhabditis elegans Hypothetical
           protein F14D2.13 protein.
          Length = 249

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = +1

Query: 247 PSAHVSEPPTEPQGTHISRLYPELLALIFERLPVRDRGRAAQVCRAWRDAAD 402
           P    SEPPT      +S +  E+L  I E L   +R    +VCR  RDA D
Sbjct: 45  PETFFSEPPT------LSDMSMEVLGKIVENLDPFNRLSVRKVCRKLRDAID 90


>Z82282-4|CAB05276.1|  485|Caenorhabditis elegans Hypothetical
           protein T07G12.4 protein.
          Length = 485

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 347 CETGAELHKFVARGGTQLIEDLFGVA*KPLCIYGDLLLYCL 469
           C   A   K     G + I+D+FG   K   + G L+ +CL
Sbjct: 369 CTIPAHFEKSPLHSGNKTIDDIFGTLLKMRMLVGGLIAFCL 409


>Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical
           protein T07G12.2 protein.
          Length = 544

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 347 CETGAELHKFVARGGTQLIEDLFGVA*KPLCIYGDLLLYCL 469
           C   A   K     G + I+D+FG   K   + G L+ +CL
Sbjct: 431 CTIPAHFEKSPLHSGNKTIDDIFGTLLKMRMLVGGLIAFCL 471


>U64849-1|AAC48052.3|  936|Caenorhabditis elegans Daf-12, redundant
           with protein 1 protein.
          Length = 936

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 277 EPQGTHISRLYPELLALIFERLPVRDRGRAAQVCRAWRDAADRRSVWRGVEAALH 441
           E Q  HI+RL  ELL  +F  LP +     + V   +   ++   VW+ +   L+
Sbjct: 156 EDQQDHINRLPEELLLKVFSFLPDKSLLACSSVSYRFNQISNSHEVWKELYCNLY 210


>AC006714-11|AAN65282.3|  306|Caenorhabditis elegans F-box a protein
           protein 61 protein.
          Length = 306

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 328 IFERLPVRDRGRAAQVCRAWRDAADRRSV 414
           IFE+L   DR R+ +VCR  R A D+  V
Sbjct: 21  IFEKLEPMDRLRSRKVCRVLRAAMDKLGV 49


>Z48809-8|CAA88748.2|  535|Caenorhabditis elegans Hypothetical
           protein T01E8.1 protein.
          Length = 535

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 646 LDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWG 783
           L   L  ++TD  L ++  + K +E++ L  C N+T+ G   +  G
Sbjct: 64  LTFYLSAELTDEMLNQLTTNNKYVEKITLVDCPNVTNLGAQAVTTG 109


>Z48795-8|CAA88732.2|  535|Caenorhabditis elegans Hypothetical
           protein T01E8.1 protein.
          Length = 535

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 646 LDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWG 783
           L   L  ++TD  L ++  + K +E++ L  C N+T+ G   +  G
Sbjct: 64  LTFYLSAELTDEMLNQLTTNNKYVEKITLVDCPNVTNLGAQAVTTG 109


>Z22179-17|CAA80171.2|  691|Caenorhabditis elegans Hypothetical
           protein F58A4.11 protein.
          Length = 691

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 178 ELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPQGTHISRLYPELLALIFE 336
           ++ S TT  +  S PY     H P+   +E PT   G   +   PE +A  FE
Sbjct: 29  DVSSFTTTSESTSPPYSSSEHHSPTDQRTETPTSDSGN--ASFSPENVATSFE 79


>Z22173-3|CAA80127.2|  691|Caenorhabditis elegans Hypothetical
           protein F58A4.11 protein.
          Length = 691

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 178 ELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPQGTHISRLYPELLALIFE 336
           ++ S TT  +  S PY     H P+   +E PT   G   +   PE +A  FE
Sbjct: 29  DVSSFTTTSESTSPPYSSSEHHSPTDQRTETPTSDSGN--ASFSPENVATSFE 79


>Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical
           protein F17C11.1 protein.
          Length = 172

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 402 SKICLAWRRSRSASTETCSCTVCIL 476
           SK    W  + +A+   CSCT C+L
Sbjct: 85  SKCVFKWAFATTAAATACSCTCCLL 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,949,684
Number of Sequences: 27780
Number of extensions: 383009
Number of successful extensions: 1056
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)