Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3i07
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591     97   2e-20
10_08_0422 - 17796916-17797167,17797328-17797453,17797546-177977...    73   2e-13
01_06_1496 + 37772838-37772935,37773039-37773243,37773649-377737...    44   2e-04
01_01_0549 - 4051257-4051709,4051967-4052075,4053194-4053252,405...    43   3e-04
03_05_0988 - 29458789-29459776,29459875-29460035,29460134-294602...    29   5.0  
03_02_0732 - 10794173-10795069,10795301-10795891,10797032-10797268     28   6.6  
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254...    28   8.8  

>09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591
          Length = 455

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 53/157 (33%), Positives = 88/157 (56%)
 Frame = +3

Query: 222 RQLSVCRTMAEKFRLPERYGAGEKSVWVEYIQLAAEYKPAVNLGQGFPDYHAPKHVTEAL 401
           +Q  V  T+     + +R    + +++ +   LA ++  A+NLGQGFP++  P  V EA 
Sbjct: 59  QQQPVQSTLGPGVTVAKRLEKFKTTIFTQMSMLAIKHG-AINLGQGFPNFDGPDFVKEAA 117

Query: 402 SQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTIL 581
            Q   +     +QY RG+G+P L   +++ +    G Q+D   E+ VTSG  EA+ +TIL
Sbjct: 118 IQAINAGK---NQYARGYGVPELNSAIAERFLKDSGLQVDPEKEVTVTSGCTEAIAATIL 174

Query: 582 GHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKP 692
           G ++ GDEVI+  P++D Y+  +  AG   + I L+P
Sbjct: 175 GLINPGDEVILFAPFYDSYEATLSMAGANVKAITLRP 211


>10_08_0422 -
           17796916-17797167,17797328-17797453,17797546-17797700,
           17797793-17797907,17798022-17798118,17798274-17798368,
           17798500-17798585,17798689-17798819,17798909-17799090
          Length = 412

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
 Frame = +3

Query: 303 VEYIQLAAEYKPAVNLGQGFPDYHAPKHVTEALSQIATSENPLLHQYTRGFGL-PRLVEN 479
           ++ +   A+   AVNL +GFPD+ AP HV  A +    ++   L+QY    G+   L E 
Sbjct: 17  IQQLSHLAQRAGAVNLAEGFPDFPAPAHVKAAAAAAIAAD---LNQYRHVQGICDALAET 73

Query: 480 LSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCA 659
           + + +    G ++D   +  V  G  EA  + I   +D GDEV++ +P F+ Y   ++ A
Sbjct: 74  MKRDH----GLRVDPLTDFAVCCGQSEAFAAAIFAIIDQGDEVLLFDPAFETYQTCIELA 129

Query: 660 GGVPRFIALKP 692
            GVP ++ L P
Sbjct: 130 RGVPVYVPLDP 140


>01_06_1496 +
           37772838-37772935,37773039-37773243,37773649-37773742,
           37773830-37773933,37774370-37774618,37774706-37774819,
           37775010-37775093,37775292-37775462,37775544-37775657,
           37775751-37775894
          Length = 458

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 31/112 (27%), Positives = 48/112 (42%)
 Frame = +3

Query: 336 PAVNLGQGFPDYHAPKHVTEALSQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQ 515
           P + L  G PD+  P  + EA    A  +     +YT   G   L + +        G  
Sbjct: 82  PVIGLAAGEPDFDTPHVIAEA-GMNAIKDG--YTRYTPNAGTLELRKAICNKLQEENGIS 138

Query: 516 IDAFNEILVTSGAYEALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVP 671
               +++LV++GA + +   +L     GDEV+I  PY+  Y  M   AG  P
Sbjct: 139 YSP-DQVLVSNGAKQCITQAVLAVCSPGDEVLIPAPYWVSYPEMATLAGATP 189


>01_01_0549 -
           4051257-4051709,4051967-4052075,4053194-4053252,
           4053339-4053445,4053711-4053867,4054110-4054169,
           4055396-4055524,4056027-4056074,4057148-4057214,
           4057948-4058006
          Length = 415

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 3/128 (2%)
 Frame = +3

Query: 255 KFRLPERYGAGEKSVWVEYI---QLAAEYKPAVNLGQGFPDYHAPKHVTEALSQIATSEN 425
           +F L     A + S W E     +L    K  ++L QG   +  P+     + +I     
Sbjct: 22  RFGLAFEQKAQKVSAWEEQNAMQELLRGNKDVMSLAQGVVYWQPPEAAMNKIKEIVWE-- 79

Query: 426 PLLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILGHVDTGDE 605
           P + +Y    GLP L E L +    L        + I+VTSGA +A  + +L   D GD 
Sbjct: 80  PSISKYGSDDGLPELREALLE---KLRRENKLTKSSIMVTSGANQAFVNVVLTLCDAGDA 136

Query: 606 VIIIEPYF 629
           V++  PY+
Sbjct: 137 VVMFAPYY 144


>03_05_0988 -
           29458789-29459776,29459875-29460035,29460134-29460271,
           29460367-29460543
          Length = 487

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +3

Query: 456 GLPRLVENLSKVYSPLIGRQI--DAFNEILVTSGAYEALYSTILGHVDTGDEVIIIEPYF 629
           GLP     L++  S   G ++  D  N I++T+GA  A  + +    D GD  +I  PY+
Sbjct: 99  GLPAFKNALARFMSEQRGYKVVFDPSN-IVLTAGATSANEALMFCLADHGDAFLIPTPYY 157

Query: 630 DCYDFMVKCAGG 665
             +D  +K   G
Sbjct: 158 PGFDRDLKWRTG 169


>03_02_0732 - 10794173-10795069,10795301-10795891,10797032-10797268
          Length = 574

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 315 VCTQPIRFSHQLHNVPAIETFLPL 244
           +C  P+ F++ L N PA ETFLPL
Sbjct: 294 MCAAPVVFNN-LINAPASETFLPL 316


>11_01_0342 +
           2548147-2548275,2548385-2548425,2548521-2548570,
           2548830-2548974,2549854-2549859,2550122-2550245,
           2550422-2550877,2550960-2551013
          Length = 334

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -2

Query: 664 PPAHFTMKS*Q-SKYGSIMITSSPVST*PKMVE*SAS*APLVTRISLKASICRPISGE 494
           PP H T  S Q + YG+ ++   P  T P  +  S +  P+++R  +K ++ R +  +
Sbjct: 262 PPLHPTSASAQRATYGTPLLQPFPPPTPPPSLTPSYNEGPIISRDKVKEALLRLVQND 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,934,124
Number of Sequences: 37544
Number of extensions: 395282
Number of successful extensions: 779
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)