Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3i07
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031621-5|CAA20930.1|  437|Caenorhabditis elegans Hypothetical ...   145   3e-35
Z69793-5|CAA93673.2|  441|Caenorhabditis elegans Hypothetical pr...   144   8e-35
Z69793-6|CAI46593.1|  424|Caenorhabditis elegans Hypothetical pr...   143   1e-34
U64600-1|AAK39203.1|  500|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z82078-2|CAD54160.1|  714|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z82078-1|CAB04944.2|  707|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AL031621-5|CAA20930.1|  437|Caenorhabditis elegans Hypothetical
           protein F28H6.3 protein.
          Length = 437

 Score =  145 bits (351), Expect = 3e-35
 Identities = 77/143 (53%), Positives = 95/143 (66%), Gaps = 1/143 (0%)
 Frame = +3

Query: 270 ERYGAGEKSVWVEYIQLAAEYKPAVNLGQGFPDYHAPKHVTEALSQIATSENPL-LHQYT 446
           E  G  ++S+WVE+ +LA E K AV+LGQGFPD  APK VTE L  IA+    +  HQYT
Sbjct: 11  ENVGEHQESIWVEFGKLAIENK-AVSLGQGFPDSPAPKFVTEILKDIASHPEKIESHQYT 69

Query: 447 RGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILGHVDTGDEVIIIEPY 626
           R FG P LV  LSK+YS   G  ++A ++IL+T GAY ALY + LG +  GDEVIIIEP 
Sbjct: 70  RAFGHPDLVGILSKIYSYFYGVNVNATDDILITVGAYNALYYSFLGWISKGDEVIIIEPA 129

Query: 627 FDCYDFMVKCAGGVPRFIALKPK 695
           FDCY   VK AGG P  + +K K
Sbjct: 130 FDCYFPQVKFAGGTPISVVMKLK 152


>Z69793-5|CAA93673.2|  441|Caenorhabditis elegans Hypothetical
           protein R03A10.4a protein.
          Length = 441

 Score =  144 bits (348), Expect = 8e-35
 Identities = 79/149 (53%), Positives = 95/149 (63%), Gaps = 2/149 (1%)
 Frame = +3

Query: 231 SVCRTMAEKFRLP-ERYGAGEKSVWVEYIQLAAEYKPAVNLGQGFPDYHAPKHVTEALSQ 407
           S CR  +     P ER      S+WVE+  LAAE K AVNLGQGFPD  APK VT+ L  
Sbjct: 14  SRCRMSSSFAPKPAERTAQHSASIWVEFTTLAAETK-AVNLGQGFPDSPAPKFVTDLLEN 72

Query: 408 IATS-ENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILG 584
           ++   E    HQYTRG+G P LV+ L+K+YS     Q+D  NE+LVT GAY +LY   LG
Sbjct: 73  LSKHPELTAAHQYTRGYGHPMLVDILAKMYSHFYNVQVDPMNEVLVTVGAYLSLYYAFLG 132

Query: 585 HVDTGDEVIIIEPYFDCYDFMVKCAGGVP 671
            V+ GDEV+IIEP +DCY   VK AGGVP
Sbjct: 133 WVNKGDEVLIIEPAYDCYYPQVKFAGGVP 161


>Z69793-6|CAI46593.1|  424|Caenorhabditis elegans Hypothetical
           protein R03A10.4b protein.
          Length = 424

 Score =  143 bits (347), Expect = 1e-34
 Identities = 75/135 (55%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
 Frame = +3

Query: 270 ERYGAGEKSVWVEYIQLAAEYKPAVNLGQGFPDYHAPKHVTEALSQIATS-ENPLLHQYT 446
           ER      S+WVE+  LAAE K AVNLGQGFPD  APK VT+ L  ++   E    HQYT
Sbjct: 11  ERTAQHSASIWVEFTTLAAETK-AVNLGQGFPDSPAPKFVTDLLENLSKHPELTAAHQYT 69

Query: 447 RGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILGHVDTGDEVIIIEPY 626
           RG+G P LV+ L+K+YS     Q+D  NE+LVT GAY +LY   LG V+ GDEV+IIEP 
Sbjct: 70  RGYGHPMLVDILAKMYSHFYNVQVDPMNEVLVTVGAYLSLYYAFLGWVNKGDEVLIIEPA 129

Query: 627 FDCYDFMVKCAGGVP 671
           +DCY   VK AGGVP
Sbjct: 130 YDCYYPQVKFAGGVP 144


>U64600-1|AAK39203.1|  500|Caenorhabditis elegans Hypothetical
           protein C33D12.2 protein.
          Length = 500

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/66 (34%), Positives = 30/66 (45%)
 Frame = +3

Query: 429 LLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILGHVDTGDEV 608
           L  + TR     +LVE L      +IG Q D F  +L   GA E LY   + H  T  E 
Sbjct: 287 LKEELTRSLERNKLVEMLKLSEKSIIGGQSDEFKMVL---GALE-LYDKTVAHAMTRYED 342

Query: 609 IIIEPY 626
           I + P+
Sbjct: 343 IFMLPH 348


>Z82078-2|CAD54160.1|  714|Caenorhabditis elegans Hypothetical
           protein W09D6.1b protein.
          Length = 714

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 213 HF-IRQLSVCRTMAEKFRLPERYGAGEKSVWVEYIQL 320
           HF I  ++ CR+   K R+   YG  E S W  Y ++
Sbjct: 242 HFPISSINSCRSPENKTRVFNVYGVTEVSCWASYFEV 278


>Z82078-1|CAB04944.2|  707|Caenorhabditis elegans Hypothetical
           protein W09D6.1a protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 213 HF-IRQLSVCRTMAEKFRLPERYGAGEKSVWVEYIQL 320
           HF I  ++ CR+   K R+   YG  E S W  Y ++
Sbjct: 242 HFPISSINSCRSPENKTRVFNVYGVTEVSCWASYFEV 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,414,833
Number of Sequences: 27780
Number of extensions: 347653
Number of successful extensions: 701
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)