Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3i06
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei... 41 2e-04
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|... 35 0.012
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 34 0.022
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family... 29 0.47
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 28 1.4
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar... 27 2.5
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 4.4
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 26 5.8
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 25 7.6
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 25 7.6
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 25 7.6
>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 40.7 bits (91), Expect = 2e-04
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 16/75 (21%)
Frame = +1
Query: 142 VIIGGGTGFIGKHLGELLSSKGYDIMNVARM---------PASKNISWSTIEA-----SG 279
+++ GG+GF+G ++ +L +KGY++++V+R P ++ W T++A S
Sbjct: 3 IVVLGGSGFLGHNICKLAIAKGYEVVSVSRRGAGGLHNKEPWMDDVEWETLDAQKDPNSL 62
Query: 280 LP--KDTSAVVNCAG 318
LP +D SAVVN G
Sbjct: 63 LPVLRDASAVVNSVG 77
>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 34.7 bits (76), Expect = 0.012
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 127 MTAKSVIIGGGTGFIGKHLGELLSSKGYDIMNVAR 231
M+ K V++ G TGFIG H+ E L GY + R
Sbjct: 1 MSGKLVLVTGVTGFIGAHVAEQLLQAGYRVRGTVR 35
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 33.9 bits (74), Expect = 0.022
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 139 SVIIGGGTGFIGKHLGELLSSKGYDIMNVARMPASK 246
+V++ GG G+IG H +L KGYD++ V + S+
Sbjct: 8 TVLVTGGAGYIGSHTCVVLLEKGYDVVIVDNLCNSR 43
>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 29.5 bits (63), Expect = 0.47
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 142 VIIGGGTGFIGKHLGELLSSKGYDIMNVAR 231
V+I G TGF+ H E L S+GY + R
Sbjct: 5 VLITGITGFVASHSAEALLSQGYRVRGTYR 34
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 239 PRKIYP--GQQ*RPPAYQKILRLLSIVLDNNSWTLPSP 346
P +YP G+ RPP Y + LS D + +LP P
Sbjct: 275 PEYVYPDFGKMMRPPQYHIAFQALSAFADAHEGSLPRP 312
>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 136 KSVIIGGGTGFIGKHLGELLSSKGYDIMNVAR 231
+ V+I GG+ +GK + ++ S KG+ V R
Sbjct: 2 RKVLITGGSSGLGKRIAQIWSQKGHQCHIVGR 33
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 258 VNNRGLRLTKRYFGCCQLCWTTIHGLYQ 341
V +R LRL K+Y +CW I L Q
Sbjct: 1229 VFSRNLRLLKKYLNDVSICWEQIVYLVQ 1256
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 142 VIIGGGTGFIGKHLGELLSSKGYDIMNV 225
+++ GG G+IG H L + GY ++ V
Sbjct: 8 ILVTGGAGYIGSHTVIELINHGYKVIIV 35
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 599 IITSLTGGST*AAFSHSTTNREKKSVPVVGLLSSY 495
+IT +GG AA + TN E K + V L S Y
Sbjct: 279 VITGTSGGGLLAALVCTRTNEELKQLLVPELASKY 313
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 360 ESWCPGLGKVHELLSSTIDNSRSIF 286
E W + K+ + + STIDNSR +
Sbjct: 28 EQWSDQIHKLDKAIRSTIDNSRLFY 52
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +1
Query: 307 NCAGQQFMDFTKSWTPGFKQNVQNSRIYTTKALATAINKAQDKPKVFVLVTGVG 468
N + + + + SWTP + IY +K D PK+ VL+TG G
Sbjct: 240 NPSSTKLLITSTSWTP-------DEDIYILWEALNEYDKTLDTPKLLVLITGKG 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,960
Number of Sequences: 5004
Number of extensions: 58969
Number of successful extensions: 194
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -