Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3i06
         (678 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069155-1|AAL39300.1|  302|Drosophila melanogaster GH17516p pro...   175   5e-44
AE013599-1571|AAF58468.2|  302|Drosophila melanogaster CG8768-PA...   175   5e-44
AY051913-1|AAK93337.1|  441|Drosophila melanogaster LD39959p pro...    31   1.1  
AE014296-1387|AAF50474.1|  441|Drosophila melanogaster CG7979-PA...    31   1.1  
DQ228797-1|ABB54750.1| 1715|Drosophila melanogaster Dicer-2 prot...    30   3.3  
AE013599-2318|AAF57974.1|  625|Drosophila melanogaster CG5065-PA...    29   4.4  
BT029561-1|ABL75621.1|  210|Drosophila melanogaster IP16831p pro...    29   7.7  

>AY069155-1|AAL39300.1|  302|Drosophila melanogaster GH17516p
           protein.
          Length = 302

 Score =  175 bits (426), Expect = 5e-44
 Identities = 84/184 (45%), Positives = 119/184 (64%), Gaps = 2/184 (1%)
 Frame = +1

Query: 133 AKSVIIGGGTGFIGKHLGELLSSKGYDIMNVARMPASKNISWSTIEASGLPKDTSAVVNC 312
           ++  +IGGGTGFIG++L   L+ KGYD+  ++RMP +K I+W  +E +G+P   +AVVN 
Sbjct: 7   SRHALIGGGTGFIGRNLANHLTKKGYDVTVISRMPGAKRITWHELEKNGIPGSVNAVVNA 66

Query: 313 AGQQFMDFTKSWTPGFKQNVQNSRIYTTKALATAINKAQDKPKVFVLVTGVGAYEPSNVN 492
            GQ  +D T+ WTPGF+QNV NSRI ++K LA AI K+  +   FV + GV  Y+PS   
Sbjct: 67  TGQNTLDPTRRWTPGFQQNVWNSRINSSKTLAQAI-KSAPQVSSFVNLCGVSHYKPSESK 125

Query: 493 KYDESSPTTGTDFFSRLVVEWEKAAQV--DPPVRLVIIRSGAVLGRWGGMIKNMFLPFFL 666
            Y E     G D+ SRL + WE+AA    +   +  I+R GAV+G  GGM+++M+LPF  
Sbjct: 126 VYTEEDQVQGFDYMSRLCLAWEEAAHTGSEQDCKTTILRCGAVVGHGGGMVQSMWLPFKF 185

Query: 667 GFGG 678
           G GG
Sbjct: 186 GVGG 189


>AE013599-1571|AAF58468.2|  302|Drosophila melanogaster CG8768-PA
           protein.
          Length = 302

 Score =  175 bits (426), Expect = 5e-44
 Identities = 84/184 (45%), Positives = 119/184 (64%), Gaps = 2/184 (1%)
 Frame = +1

Query: 133 AKSVIIGGGTGFIGKHLGELLSSKGYDIMNVARMPASKNISWSTIEASGLPKDTSAVVNC 312
           ++  +IGGGTGFIG++L   L+ KGYD+  ++RMP +K I+W  +E +G+P   +AVVN 
Sbjct: 7   SRHALIGGGTGFIGRNLANHLTKKGYDVTVISRMPGAKRITWHELEKNGIPGSVNAVVNA 66

Query: 313 AGQQFMDFTKSWTPGFKQNVQNSRIYTTKALATAINKAQDKPKVFVLVTGVGAYEPSNVN 492
            GQ  +D T+ WTPGF+QNV NSRI ++K LA AI K+  +   FV + GV  Y+PS   
Sbjct: 67  TGQNTLDPTRRWTPGFQQNVWNSRINSSKTLAQAI-KSAPQVSSFVNLCGVSHYKPSESK 125

Query: 493 KYDESSPTTGTDFFSRLVVEWEKAAQV--DPPVRLVIIRSGAVLGRWGGMIKNMFLPFFL 666
            Y E     G D+ SRL + WE+AA    +   +  I+R GAV+G  GGM+++M+LPF  
Sbjct: 126 VYTEEDQVQGFDYMSRLCLAWEEAAHTGSEQDCKTTILRCGAVVGHGGGMVQSMWLPFKF 185

Query: 667 GFGG 678
           G GG
Sbjct: 186 GVGG 189


>AY051913-1|AAK93337.1|  441|Drosophila melanogaster LD39959p
           protein.
          Length = 441

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 136 KSVIIGGGTGFIGKHLGELLSSKGYDIMNV 225
           K ++I GG GF+G HL + L  +G++++ V
Sbjct: 116 KRILITGGAGFVGSHLVDDLMVQGHEVIVV 145


>AE014296-1387|AAF50474.1|  441|Drosophila melanogaster CG7979-PA
           protein.
          Length = 441

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 136 KSVIIGGGTGFIGKHLGELLSSKGYDIMNV 225
           K ++I GG GF+G HL + L  +G++++ V
Sbjct: 116 KRILITGGAGFVGSHLVDDLMVQGHEVIVV 145


>DQ228797-1|ABB54750.1| 1715|Drosophila melanogaster Dicer-2 protein.
          Length = 1715

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
 Frame = +1

Query: 316  GQQFMDFTKSWTPGF---KQNVQNSRIYTTKALATAINKAQDKPKVFVLVTGVGAYEPSN 486
            G  F D  K W P F   +++ +NS +     L     K  D  ++      +    PSN
Sbjct: 797  GMVFRDILKIWHPFFVLDRRSKENSYLVVPLILGAGEQKCFDW-ELMTNFRRLPQSHPSN 855

Query: 487  VNKYDESSPTTGTDFFSRLVVEWEKAAQVDPPV 585
            V + ++       DF  ++V +W   A  D P+
Sbjct: 856  VQQREQQPAPRPEDFEGKIVTQW--YANYDKPM 886


>AE013599-2318|AAF57974.1|  625|Drosophila melanogaster CG5065-PA
           protein.
          Length = 625

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 136 KSVIIGGGTGFIGKHLGELLSSKGYDIMNV 225
           +SV I GGTGF+GK L E L     +I N+
Sbjct: 126 RSVFITGGTGFMGKVLVEKLLRSCPEIRNI 155


>BT029561-1|ABL75621.1|  210|Drosophila melanogaster IP16831p
           protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 460 GVGAYEP--SNVNKYDESSPTTGTDFFSRLVVEWEKAAQVDP 579
           G GA EP  S     DE +P +  DFF+R  +E ++  Q  P
Sbjct: 140 GAGAGEPTESGYQTIDELTPNSADDFFTRAWLEQQQQQQQLP 181


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,488,383
Number of Sequences: 53049
Number of extensions: 626051
Number of successful extensions: 1687
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1683
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)