Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3i06
(678 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81553-5|CAB04494.1| 382|Caenorhabditis elegans Hypothetical pr... 33 0.19
AM231685-1|CAJ77754.1| 375|Caenorhabditis elegans GDP-mannose 4... 33 0.19
U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva ... 33 0.25
AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuroni... 33 0.25
U21321-8|AAG00045.1| 296|Caenorhabditis elegans Hypothetical pr... 32 0.43
Z68215-14|CAL49436.1| 394|Caenorhabditis elegans Hypothetical p... 31 0.57
Z68215-13|CAL49435.1| 382|Caenorhabditis elegans Hypothetical p... 31 0.57
Z68215-12|CAA92455.2| 368|Caenorhabditis elegans Hypothetical p... 31 0.57
Z68215-10|CAC42269.1| 399|Caenorhabditis elegans Hypothetical p... 31 0.57
Z68215-9|CAC42270.1| 384|Caenorhabditis elegans Hypothetical pr... 31 0.57
AM231684-1|CAJ77753.1| 384|Caenorhabditis elegans GDP-mannose 4... 31 0.57
AM231683-1|CAJ77752.1| 399|Caenorhabditis elegans GDP-mannose 4... 31 0.57
U40939-5|AAA81703.3| 343|Caenorhabditis elegans Hypothetical pr... 31 1.00
U23484-16|AAK68297.1| 358|Caenorhabditis elegans Hypothetical p... 30 1.3
AF098505-1|AAC67415.1| 536|Caenorhabditis elegans Hypothetical ... 30 1.3
Z49912-7|CAI70412.1| 554|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z49912-6|CAA90137.1| 615|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 28 7.0
U50311-4|AAA92309.1| 491|Caenorhabditis elegans Serpentine rece... 27 9.3
U50311-3|AAK68203.1| 589|Caenorhabditis elegans Serpentine rece... 27 9.3
>Z81553-5|CAB04494.1| 382|Caenorhabditis elegans Hypothetical
protein F56H6.5 protein.
Length = 382
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 136 KSVIIGGGTGFIGKHLGELLSSKGYDIMNVARMPASKN 249
K +I G TG G +L ELL SKGY + + R +S N
Sbjct: 34 KVALITGITGQDGSYLAELLLSKGYKVHGIIRRSSSFN 71
>AM231685-1|CAJ77754.1| 375|Caenorhabditis elegans GDP-mannose
4,6-dehydratase protein.
Length = 375
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 136 KSVIIGGGTGFIGKHLGELLSSKGYDIMNVARMPASKN 249
K +I G TG G +L ELL SKGY + + R +S N
Sbjct: 27 KVALITGITGQDGSYLAELLLSKGYKVHGIIRRSSSFN 64
>U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva
protein 1 protein.
Length = 467
Score = 32.7 bits (71), Expect = 0.25
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 130 TAKSVIIGGGTGFIGKHLGELLSSKGYDIM 219
T K ++I GG GF+G HL + L G++++
Sbjct: 135 TRKRILITGGAGFVGSHLVDKLMLDGHEVI 164
>AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuronic
acid decarboxylase protein.
Length = 467
Score = 32.7 bits (71), Expect = 0.25
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 130 TAKSVIIGGGTGFIGKHLGELLSSKGYDIM 219
T K ++I GG GF+G HL + L G++++
Sbjct: 135 TRKRILITGGAGFVGSHLVDKLMLDGHEVI 164
>U21321-8|AAG00045.1| 296|Caenorhabditis elegans Hypothetical
protein ZK177.2 protein.
Length = 296
Score = 31.9 bits (69), Expect = 0.43
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +1
Query: 214 IMNVARMPASKNISWSTIEASGLPKDTSAVVNCAGQQFMDFTKSWTPGFKQNVQNSRIYT 393
+MN+ P +K I+ + T ++ Q +DF+KSW + SR++T
Sbjct: 191 MMNILIAPTTKRWIEYNIDGKTITIQTFGII----PQLIDFSKSWCGADPERHDISRLHT 246
Query: 394 -TKALATAIN-KAQDKPKVFVLVTGVGA 471
K + ++N +DK KV V VGA
Sbjct: 247 VAKRVGHSLNGSKRDKKKVRQAVKMVGA 274
>Z68215-14|CAL49436.1| 394|Caenorhabditis elegans Hypothetical
protein C53B4.7e protein.
Length = 394
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 136 KSVIIGGGTGFIGKHLGELLSSKGYDIMNVARMPASKN 249
K +I G +G G +L ELL SKGY + + R +S N
Sbjct: 46 KVALITGISGQDGSYLAELLLSKGYKVHGIIRRSSSFN 83
>Z68215-13|CAL49435.1| 382|Caenorhabditis elegans Hypothetical
protein C53B4.7d protein.
Length = 382
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 136 KSVIIGGGTGFIGKHLGELLSSKGYDIMNVARMPASKN 249
K +I G +G G +L ELL SKGY + + R +S N
Sbjct: 34 KVALITGISGQDGSYLAELLLSKGYKVHGIIRRSSSFN 71
>Z68215-12|CAA92455.2| 368|Caenorhabditis elegans Hypothetical
protein C53B4.7c protein.
Length = 368
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 136 KSVIIGGGTGFIGKHLGELLSSKGYDIMNVARMPASKN 249
K +I G +G G +L ELL SKGY + + R +S N
Sbjct: 20 KVALITGISGQDGSYLAELLLSKGYKVHGIIRRSSSFN 57
>Z68215-10|CAC42269.1| 399|Caenorhabditis elegans Hypothetical
protein C53B4.7b protein.
Length = 399
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 136 KSVIIGGGTGFIGKHLGELLSSKGYDIMNVARMPASKN 249
K +I G +G G +L ELL SKGY + + R +S N
Sbjct: 51 KVALITGISGQDGSYLAELLLSKGYKVHGIIRRSSSFN 88
>Z68215-9|CAC42270.1| 384|Caenorhabditis elegans Hypothetical
protein C53B4.7a protein.
Length = 384
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 136 KSVIIGGGTGFIGKHLGELLSSKGYDIMNVARMPASKN 249
K +I G +G G +L ELL SKGY + + R +S N
Sbjct: 36 KVALITGISGQDGSYLAELLLSKGYKVHGIIRRSSSFN 73
>AM231684-1|CAJ77753.1| 384|Caenorhabditis elegans GDP-mannose
4,6-dehydratase protein.
Length = 384
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 136 KSVIIGGGTGFIGKHLGELLSSKGYDIMNVARMPASKN 249
K +I G +G G +L ELL SKGY + + R +S N
Sbjct: 36 KVALITGISGQDGSYLAELLLSKGYKVHGIIRRSSSFN 73
>AM231683-1|CAJ77752.1| 399|Caenorhabditis elegans GDP-mannose
4,6-dehydratase protein.
Length = 399
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 136 KSVIIGGGTGFIGKHLGELLSSKGYDIMNVARMPASKN 249
K +I G +G G +L ELL SKGY + + R +S N
Sbjct: 51 KVALITGISGQDGSYLAELLLSKGYKVHGIIRRSSSFN 88
>U40939-5|AAA81703.3| 343|Caenorhabditis elegans Hypothetical
protein F13D11.4 protein.
Length = 343
Score = 30.7 bits (66), Expect = 1.00
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 142 VIIGGGTGFIGKHLGELLSSKGYDIMNVAR 231
V++ G +GFIG H E+L GY + R
Sbjct: 8 VLVTGASGFIGTHCVEILLKNGYRVRGTVR 37
>U23484-16|AAK68297.1| 358|Caenorhabditis elegans Hypothetical
protein EEED8.15 protein.
Length = 358
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 451 LVTGV-GAYEPSNVNKYDESSPTTGTDFFSRL 543
+ TG+ GA+ S +NKY+E+ T G F +RL
Sbjct: 209 IATGICGAWRLSEINKYNETLKTRGVSFPNRL 240
>AF098505-1|AAC67415.1| 536|Caenorhabditis elegans Hypothetical
protein Y71H10A.2 protein.
Length = 536
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +1
Query: 124 IMTAKSVIIGGGTGFIGKHLGELLSSKGYDIMNVARMPASKNISWSTIEASGLPKD 291
+ SV++ GGTGF+GK + E L DI N+ M ++ SGL D
Sbjct: 8 VYAGSSVLLTGGTGFLGKVIVEKLLWTIDDIQNIYLMIRTRKGKNPQERLSGLLHD 63
>Z49912-7|CAI70412.1| 554|Caenorhabditis elegans Hypothetical
protein T24F1.3b protein.
Length = 554
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 208 YDIMNVARMPASKNISWSTIEASGLPKDTSAVVN 309
YD++N A+ A K S TI + LP++T+ V+N
Sbjct: 324 YDVVNTAKSTA-KTTSLRTITSFFLPRNTAKVIN 356
>Z49912-6|CAA90137.1| 615|Caenorhabditis elegans Hypothetical
protein T24F1.3a protein.
Length = 615
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 208 YDIMNVARMPASKNISWSTIEASGLPKDTSAVVN 309
YD++N A+ A K S TI + LP++T+ V+N
Sbjct: 385 YDVVNTAKSTA-KTTSLRTITSFFLPRNTAKVIN 417
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = -2
Query: 377 FCTFCLNPGVQDLVKSMNCCPAQLTTAEVSFGKPEASIVDQDIFFEAGIRATFI 216
+C P + +NC ++T E++ GKP + ++ D AG T +
Sbjct: 57 YCCQNPTPTAKSSTDKINCGEGRVTYIEMATGKPRSCVLTGDNSCPAGFGCTLV 110
>U50311-4|AAA92309.1| 491|Caenorhabditis elegans Serpentine
receptor, class sx protein34, isoform a protein.
Length = 491
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 251 IFFEAGIRATFIISYPFDESSSP 183
+FF A +II+YPF+ +S+P
Sbjct: 345 LFFTIAFGAVYIITYPFEFTSNP 367
>U50311-3|AAK68203.1| 589|Caenorhabditis elegans Serpentine
receptor, class sx protein34, isoform b protein.
Length = 589
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 251 IFFEAGIRATFIISYPFDESSSP 183
+FF A +II+YPF+ +S+P
Sbjct: 345 LFFTIAFGAVYIITYPFEFTSNP 367
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,526,226
Number of Sequences: 27780
Number of extensions: 335105
Number of successful extensions: 861
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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