Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3i06
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.7  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   2.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.5  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 271 PLLLTRIYFSRLAYELRSLYHILLMKAVRLNV 176
           PL+   +++SRL   +R+   +L  +A ++NV
Sbjct: 232 PLIFIILFYSRLLSSIRNHEKMLREQAKKMNV 263


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 472 YEPSNVNKYDESSPTTGTDFFSRLVVEWEKAAQVDPPVR 588
           Y P+ V K  +      +D +S+L   W K   +D  VR
Sbjct: 7   YRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVR 45


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 271 PLLLTRIYFSRLAYELRSLYHILLMKAVRLNV 176
           PL+   +++SRL   +R+   +L  +A ++NV
Sbjct: 232 PLIFIILFYSRLLSSIRNHEKMLREQAKKMNV 263


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -2

Query: 323 CCPAQLTTAEVSFGKPEASIVDQ 255
           C P Q T +++ + KP+ ++V++
Sbjct: 25  CQPTQRTMSKIQWRKPKPAMVEE 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,351
Number of Sequences: 438
Number of extensions: 3811
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)