Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3i05
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 49 6e-07
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 45 1e-05
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 40 4e-04
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar... 33 0.033
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S... 32 0.10
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 27 2.2
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 3.8
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 27 3.8
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 26 6.6
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 26 6.6
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 6.6
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 25 8.8
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 8.8
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po... 25 8.8
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 49.2 bits (112), Expect = 6e-07
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Frame = +3
Query: 390 NKVKFYKCDVTS-NDLETVYDNVIKEHKYIDVVVNCAG--IMNDRPNVYLKEIA----VN 548
+K+ K DVT +ET + + + +D+V+N AG ++ + + ++E+ VN
Sbjct: 47 SKLLKLKLDVTDVKSVETAFKDAKRRFGNVDIVINNAGYGLVGEFESYNIEEMHRQMNVN 106
Query: 549 VTALITSSFKAYNLMRKDHGGKGGTIINISSIVGLFQASLLPVYAATKSAV 701
+ + +A NLMR+ GKGG I+ ISS+ G + + L +Y A+K AV
Sbjct: 107 FWGVAYITKEALNLMRES--GKGGRILQISSVAGYYPSPCLSMYNASKFAV 155
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 44.8 bits (101), Expect = 1e-05
Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Frame = +3
Query: 408 KCDVTSND-LETVYDNVIKEHKYIDVVVNCAGIMNDRPNVYLKEIA--VNVTALITSSF- 575
+ DV+ D +ET + VI+ IDV++N AG+ +D P L + +V+ ++ ++
Sbjct: 51 QADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVLRGNYL 110
Query: 576 -KAYNLMRKDHGGKGGTIINISSIVG-LFQASLLPVYAATKSAVLQFSTCLGM 728
+ Y + GKGG+I+NI S+ G ++ S P Y+A K+ + + L +
Sbjct: 111 TQRYVIPHMAKQGKGGSIVNIGSVNGHIYLGS--PAYSAAKAGLENLTKALAV 161
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 39.9 bits (89), Expect = 4e-04
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Frame = +3
Query: 366 ELNDNYKGNKVKFYKCDVTS-NDLETVYDNVIKEHKYIDVVVNCAGIMNDRPNVYLKEIA 542
EL Y+ + + K DV+ + V +++ KE IDV++N AG+ V I
Sbjct: 50 ELESKYEVSVLPL-KLDVSDLKSIPGVIESLPKEFADIDVLINNAGLALGTDKVIDLNID 108
Query: 543 VNVTALITSSFKAYNLMRKD----HGGKGGTIINISSIVGLFQASLLPVYAATKSAVLQF 710
VT + T+ + R + G I+N+ SI G VY +TKSA+ QF
Sbjct: 109 DAVTMITTNVLGMMAMTRAVLPIFYSKNKGDILNVGSIAGRESYVGGSVYCSTKSALAQF 168
Query: 711 STCLGME 731
++ L E
Sbjct: 169 TSALRKE 175
>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 33.5 bits (73), Expect = 0.033
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Frame = +3
Query: 384 KGNKVKFYKCDVTSN--DLETVYDNVIKEHKYIDVVVNCAGIMNDRPNVYLKE------I 539
KG + DV S+ +L++++++V ID VV+ AG++ V E I
Sbjct: 49 KGQQHTLTIADVQSDMKNLKSIFESV-----EIDTVVHAAGVLQSSLCVRTSEKEIDSII 103
Query: 540 AVN-VTALITSSFKAYNLMRKDHGGKGGTIINISSIVGLFQASLLPVYAATKSAVLQFST 716
N V+A+ S R + + I+NISS + + VYAA+K+ + F+
Sbjct: 104 CTNLVSAIKLSKMAILEWFRNKNSERDRLILNISSRLSTYALPGTSVYAASKAGLESFTK 163
Query: 717 CLGME 731
L E
Sbjct: 164 VLAAE 168
>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 31.9 bits (69), Expect = 0.10
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Frame = +3
Query: 366 ELNDNYKGNKVKFYKCDVTSNDLETVYDNVIKE--HKYIDVVVNCAGIMNDRPNVYLKEI 539
E DN ++ K DVT D + +++ + + ++N AG P + L
Sbjct: 40 ERMDNLTKAGLQTLKLDVTDEDSVREVEQEVRKFTNGSLHYLINNAGAPCSAPAIDLD-- 97
Query: 540 AVNVTALITSSFKAYNLMRKDHGGK----GGTIINISSIVGLFQASLLPVYAATKSAVLQ 707
+V+ ++ +F M K + GTI+N++S+V + Y A+K+A+L
Sbjct: 98 IEDVSKVMDVNFYGVIRMNKAFQHQLIRAKGTIVNVNSLVSYVPFAFNAAYNASKAALLA 157
Query: 708 FSTCLGME 731
+S L +E
Sbjct: 158 YSNTLRIE 165
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +3
Query: 330 DVDSVNGKILEDELNDNYKGNKVKFYKCDVTSNDLETVYD 449
+ + + G+++E +++ + G K K + S D+ETVYD
Sbjct: 129 ETEIIEGEVVEVQIDRSITGGN-KQGKLTIRSTDMETVYD 167
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +3
Query: 366 ELNDNYKGNKVKFYKCDVTS--NDLETVYDNVIKEHKY 473
E N+N +G K+K+YK TS +D+++ + ++ + KY
Sbjct: 642 EANNNGRGWKIKYYKGLGTSDHDDMKSYFSDLDRHMKY 679
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 26.6 bits (56), Expect = 3.8
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Frame = +3
Query: 423 SNDLETVYDNVIKEHKYIDVVVNCAGIMNDRPNVYLKEIAVNVTALITSSFKAYNLMRK- 599
S++ + D +K+ +IDV+VN ++ + T+ F + + +
Sbjct: 105 SDNCRDLVDFALKKLGWIDVLVNNIAYQQVAQSIEDIDDEQWDLTFKTNIFSFFWVTKAA 164
Query: 600 -DHGGKGGTIINISSIVGLFQASLLPVYAATKSAVLQFSTCLGMEPHYSHSG 752
H G +I+N SSI L Y +TK A+ F+ G+ Y+ G
Sbjct: 165 ISHMKSGSSIVNCSSINAYVGRPDLLDYTSTKGAITAFTR--GLSNQYAQHG 214
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 435 ETVYDNVIKEHKYIDVVVNCAGIMNDRPNVYLKEIAVNVTALITSSFKAYNLMRK 599
ET N+ + K++ + N+ P+VY K + T+L+ SS AY+ M++
Sbjct: 1032 ETTNLNLDSDKKFVRETYTSSNQTNE-PDVYDKPSNSSRTSLLRSSRSAYSKMKR 1085
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 6.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 518 RSIIHYTSAVHDNVYIFMFFDH 453
R+IIH+ + DNVY ++ ++
Sbjct: 68 RNIIHFVESFEDNVYYYVVLEY 89
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +3
Query: 354 ILEDELNDNYKGNKVKFYKCDVTSNDLETVYDNVIKEHKYIDVVVNCAGI-MNDRPNVYL 530
+L + ND+ + +K K D + E+ Y+ + K ID+ I MN++ V L
Sbjct: 249 VLSSDDNDSIEEISIKKVKYDPHETNKESEYNLIGSSEKTIDITDLLDSIPMNEQLKVSL 308
Query: 531 KEIAVNVTALITSSFKA 581
K + +++ + A
Sbjct: 309 KPLVSESSSISSKKLDA 325
>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 618 GTIINISSIVGLFQASLLPVYAATKSAVLQFSTCLGME 731
G IIN+SSI G L +Y TK A+ S L E
Sbjct: 94 GMIINVSSIGGKMTFPLGCLYYGTKYAIEGISEALTWE 131
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 165 NIKFYSSLNTVFEGIVMSMYDFKE 236
N FYS LN+ E + + +YDF +
Sbjct: 484 NETFYSVLNSFSENLNLEVYDFND 507
>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 236
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 618 GTIINISSIVGLFQASLLPVYAATKSAVLQFSTCLGME 731
G IIN+SSI G L +Y TK A+ S L E
Sbjct: 94 GMIINVSSIGGKMTFPLGCLYYGTKYAIEGISEALTWE 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,699
Number of Sequences: 5004
Number of extensions: 50088
Number of successful extensions: 142
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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