Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3i03
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 66 8e-12
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 55 1e-08
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 49 7e-07
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 29 1.1
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 27 2.5
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 27 2.5
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 27 4.3
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 27 4.3
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 26 5.7
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy... 26 7.5
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 7.5
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 26 7.5
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 25 10.0
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 25 10.0
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 65.7 bits (153), Expect = 8e-12
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 3/172 (1%)
Frame = +2
Query: 296 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 475
+++ AGSRY+P A G+SH+L A TT+ S+ I R+ +G +S RE I
Sbjct: 45 LSVVINAGSRYQPDA--GVSHLLEKFAFKTTEERSALRITRESELLGGQLSTQITREHII 102
Query: 476 YTLEATQDKLNDALEILNNLVSNQEFRPWELNDNA---PRLKYDIISLPPQIRAVDLLHK 646
T + L +L +V +F P++L + R++ ++ A+ LH+
Sbjct: 103 LTARFLNEYLEYYARLLAEVVDATKFLPFQLTEEVLPTARIESELFREDILRVAMAKLHE 162
Query: 647 AAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCAVTVIGDSQERAA 802
A+ RG+GN +++ IS ++ FAS+ S +V G ++A+
Sbjct: 163 KAFHRGIGNEVYLPASASPSIS--EIKDFASKAYVKSNFSVISSGPDVQKAS 212
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 55.2 bits (127), Expect = 1e-08
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 3/173 (1%)
Frame = +2
Query: 311 KAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEA 490
KAGSRYE + G+SH + A T+ ++ KL +G S RE + Y
Sbjct: 74 KAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAKLENLGGNYMCSTSRESMIYQAAV 133
Query: 491 TQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKYDIISL--PPQIRAVDLLHKAAYRRG 664
D + ++L V + + +L + Y+ L P + H A++
Sbjct: 134 FNDDVKSMSKLLAETVLAPKIQEDDLVHYRDSIIYENSELWTKPDALLGEFAHVTAFQNN 193
Query: 665 -LGNSLFISPKRINDISSESLQLFASQNITPSRCAVTVIGDSQERAALIVQNL 820
LGN L +P ++N I++ S++ + P + G QE A I + L
Sbjct: 194 TLGNCLLCTPDKVNGITATSIREYLKYFYRPEHLTLAYAGIPQEIAKEITKEL 246
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 49.2 bits (112), Expect = 7e-07
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 4/166 (2%)
Frame = +2
Query: 296 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 475
V + AGSR E G +H L A TKN S ++ + GA+++A RE
Sbjct: 46 VLVGVDAGSRAETAKNNGAAHFLEHLAFKGTKNRSQKALELEFENTGAHLNAYTSREQTV 105
Query: 476 YTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAP---RLKYDIISLPPQIRAVDLLHK 646
Y A ++ + +A+ +L ++++N + R + ++ + ++ D LH
Sbjct: 106 YYAHAFKNAVPNAVAVLADILTNSSISASAVERERQVILREQEEVDKMADEV-VFDHLHA 164
Query: 647 AAYR-RGLGNSLFISPKRINDISSESLQLFASQNITPSRCAVTVIG 781
AY+ LG ++ + I ++ E L + N R ++ G
Sbjct: 165 TAYQGHPLGRTILGPKENIESLTREDLLQYIKDNYRSDRMIISSAG 210
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +2
Query: 218 DVRIQSSVLPNKTFVAA---LDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTT 388
DV+ +S LP + A D+GS +R + + E E+G+ H+LR +
Sbjct: 132 DVKPKSVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASV 191
Query: 389 KNISSFLIQRKLSQIG 436
+++ + Q+ S G
Sbjct: 192 GTLATRVTQQAQSLQG 207
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 27.5 bits (58), Expect = 2.5
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = +2
Query: 206 AVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLT 385
A + VR+Q LP+ FV GSP Q +LG + + + G+T
Sbjct: 857 APHRAVRLQIEDLPSNVFVTNRGRGSPA--------------DQYDLGAAQFITAVNGVT 902
Query: 386 TKNISSFLIQRKLSQIGAYVSAS 454
T N+ F+ + + +YV S
Sbjct: 903 TLNLEDFVREIRKIDDNSYVRVS 925
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 458 DREFIYYTLEATQDKLNDALEILNNLVSNQEFRP 559
+RE YY L+ +KL++ + LN + ++ P
Sbjct: 429 ERELKYYELKRKDEKLDEGIRALNQALHHESIMP 462
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -2
Query: 348 PNSACGS*REPALKAIVTRVTGEPLSKAATNVLLGKTLDWILTSFFTAGAA 196
PN ACG+ R+ + + T ++ + +A N LDW + S + A+
Sbjct: 202 PNCACGAKRQLEFQILPTLISSMNIDHSAKN-----ALDWGILSIYVCSAS 247
>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1163
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 644 KAAYRRGLGNSLFISPKRINDISSESLQ 727
K ++RRGL N + S KR+ D E ++
Sbjct: 1110 KESFRRGLNNRVKFSNKRVRDDYDEEME 1137
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 344 LGLSHVLRSAAG-LTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 499
L S L S +G T+ N+S+ QR ++ + S + D +YY T D
Sbjct: 79 LSTSSPLISTSGQFTSNNVSTTSSQRHNTKTITFFSGTSDYTSVYYDTTGTDD 131
>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 93 FVALLPKVSKNLRKWHPKLSSPPLFVMLRSGATPKL 200
FVA L V + L +WH KL F ++ PK+
Sbjct: 70 FVADLNGVYRQLLRWHAKLPRVQPFYAVKCNPDPKV 105
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 7.5
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Frame = +2
Query: 332 PQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDR-EFIYYTL-EATQDKL 505
P+AEL H+L G + ++S+F I +++ S R E ++ EA+ +
Sbjct: 19 PRAELWQRHLLEKKEGDQSISVSAFNISSMHNELSGLSEKSRQRVEAVWAAFSEASCSER 78
Query: 506 NDALE-ILNNLVSNQEFRPWELNDNAPRLKYDIISLPP 616
AL+ ILNN S+ D+ RL D +SL P
Sbjct: 79 KLALQGILNNCSSSLLSFASSTLDSLVRL--DFLSLLP 114
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 705 SLILFGEMKSELPSPRR*AALWSKSTARIWGGREIISYFRRGALSLS 565
S++ F + E + + AL SK + +WGG++ I+ F LSL+
Sbjct: 842 SILHFANLVGEPATQKSSIALVSKMVS-LWGGKDGIAGFENFTLSLT 887
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 10.0
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 581 PRLKYDIISLPPQIRAVDLLHKAAYRRGLGNSL-FISPKRINDISSESL 724
PR KYD++SL A L + + L L ++S I+SESL
Sbjct: 226 PRFKYDLLSLGRGFNATGLFRWSRHPNFLAEQLIWLSFYLFGAIASESL 274
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 10.0
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +2
Query: 230 QSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFL 409
Q+ ++ TFV A + RV +FK+ + P A + + LTT + S
Sbjct: 174 QNKLISQPTFVTASHEAQHLLRVQTSFKSSFTFLPSAINTATRSKLPSMRLTTVQVPSRS 233
Query: 410 IQ 415
+Q
Sbjct: 234 VQ 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,317,742
Number of Sequences: 5004
Number of extensions: 68511
Number of successful extensions: 178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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