Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3i01
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 29 0.52
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 29 0.91
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 28 1.2
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 27 2.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 2.8
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 3.7
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p... 27 3.7
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 27 3.7
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 26 4.8
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 26 6.4
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom... 25 8.5
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.5 bits (63), Expect = 0.52
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 668 LAGLIGPSTARSYIV*ESMCTPDNSYIAFWCAACIWA 558
+ G+ GP T +Y V + M Y F C C+W+
Sbjct: 95 IVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWS 131
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 28.7 bits (61), Expect = 0.91
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = -3
Query: 533 LTCLCIERSTVLPFQKYVSVALPSCP*SLYALG----SLAVFNR*VSFVPSLMPNNRTPL 366
+TC C ERST+ +S L S++ +G L++ + SL+P+N T +
Sbjct: 182 ITCTCPERSTIERVSSIISKILSINHDSIWGIGVNCFHLSLLEPIAKMLSSLLPSNITAI 241
Query: 365 L 363
L
Sbjct: 242 L 242
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -2
Query: 549 VYLLSTNVFVHRTFNSLAIPKICVSSFTKLPMKFVCSWESCCVQQIGQFCTF 394
+ LL +F H+ +L +P SS K+P+ + C QI + F
Sbjct: 403 IMLLPGGLFTHKDILNLLVPLYVDSSRVKVPIDIRNEMAALCFSQIDSYVRF 454
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 501 LAIPKICVSSFTKLPMKFVCSWESCCVQQIG 409
LA+ FT+ P+KF C W + +G
Sbjct: 303 LAMVSFLAGFFTRAPLKFACGWFAFIFPNVG 333
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 425 VFNR*VSFVPSLMPNNRTPLLKNPK*VAQLQRKSSFMN 312
+ N V PSLM + + L+KNPK V + + K ++ N
Sbjct: 2819 IINMMVFTTPSLMSGSFSLLVKNPK-VLEFENKRNYFN 2855
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 127 KPPCVTIKQVQHTIITHLC 183
+PPC T +++QHT+ T C
Sbjct: 959 EPPCPTDEEIQHTLCTIDC 977
>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 314
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 470 KLLTHIFGMARLLNVLCTNTLVER 541
KL+ + + LLN+ C+N+LVE+
Sbjct: 175 KLIPQLPTLENLLNIFCSNSLVEK 198
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 368 LLKNPK*VAQLQRKSSFMNLGPQAR 294
LLKN K + L RK +F +GP A+
Sbjct: 317 LLKNKKKLLPLSRKGTFAVIGPNAK 341
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 640 AVEGPIRPANSKIPVLYGIKCVHFDSPN 723
AVE + P++S P + I +H+D P+
Sbjct: 336 AVESEVAPSSSTPPTVEEISYLHYDEPS 363
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 724 N*VNQNGHI*CHRELEFWS 668
N V+QN H+ CH +FW+
Sbjct: 257 NGVSQNWHVPCHMIYKFWN 275
>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 25.4 bits (53), Expect = 8.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +2
Query: 62 KWRNYVLEHWRI 97
KW N VL HW+I
Sbjct: 42 KWENNVLRHWKI 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,303,418
Number of Sequences: 5004
Number of extensions: 73733
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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