Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3i01
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0060 - 418559-418577,418655-418738,418857-418966,419467-41...    33   0.24 
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245...    29   2.9  
02_02_0424 + 10074206-10074287,10074389-10074485,10074584-100746...    29   2.9  

>05_01_0060 -
           418559-418577,418655-418738,418857-418966,419467-419577,
           419914-419992,420182-420264,420347-420439,420902-421810
          Length = 495

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +1

Query: 460 QLGKATDTYFWNGKTVERSMHKHVSREKIDRVVAHMQAAHQKAMYELSGVHMDSQTMYDL 639
           +LG+AT T+  +   ++R   +H+  E I +V A  +    +     S + +  + MYD 
Sbjct: 375 RLGEATSTWDADSPVIQREPWEHIKDEDIRKVAASFRGEIWQVPPMFSAIKVGGEKMYDK 434

Query: 640 AVEG 651
           A  G
Sbjct: 435 ARRG 438


>08_01_0002 -
           20208-20594,21525-21671,21754-21917,22005-22162,
           24533-24826,24916-25121,25216-25812,26366-27097
          Length = 894

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 581 WCAACIWATTLSIFSRLTCLCIERSTVLPF 492
           W   CI+   LSIFS   CL +     +PF
Sbjct: 424 WLIGCIYLMLLSIFSSPLCLVLGPGVTIPF 453


>02_02_0424 +
           10074206-10074287,10074389-10074485,10074584-10074651,
           10074727-10074859,10075102-10075137,10076109-10076208,
           10076312-10076424,10076511-10076604,10077301-10077454,
           10077563-10077706,10077802-10077875,10077949-10078037,
           10078311-10078365,10078563-10078616
          Length = 430

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
 Frame = +1

Query: 610 HMDSQTMYDLAVEGPIRPANSKIPVLY-----GIKCVHFDSPNFTL 732
           H+ S ++Y L+V G + P+ S  P  Y      ++  HFDSP+FTL
Sbjct: 380 HLGSASVY-LSVGGMLLPSISHQPKGYHFSYTSLELFHFDSPDFTL 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,491,218
Number of Sequences: 37544
Number of extensions: 439229
Number of successful extensions: 825
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)