Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3i01
(736 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC001457-1|AAH01457.1| 331|Homo sapiens TruB pseudouridine (psi... 129 1e-29
AL359091-2|CAI13485.1| 331|Homo sapiens TruB pseudouridine (psi... 129 1e-29
AK001956-1|BAA92001.1| 331|Homo sapiens protein ( Homo sapiens ... 129 1e-29
AF131848-1|AAD20059.1| 331|Homo sapiens Unknown protein. 129 1e-29
BC030601-1|AAH30601.1| 349|Homo sapiens TruB pseudouridine (psi... 47 8e-05
AL355340-1|CAH73219.1| 349|Homo sapiens TruB pseudouridine (psi... 47 8e-05
AK223567-1|BAD97287.1| 349|Homo sapiens TruB pseudouridine (psi... 47 8e-05
AF448144-1|AAL40350.1| 349|Homo sapiens TruB pseudouridine synt... 47 8e-05
X72755-1|CAA51284.1| 125|Homo sapiens Humig protein. 33 1.4
BC095396-1|AAH95396.1| 125|Homo sapiens chemokine (C-X-C motif)... 33 1.4
BC063122-1|AAH63122.1| 125|Homo sapiens chemokine (C-X-C motif)... 33 1.4
BC022078-1|AAH22078.1| 282|Homo sapiens ZDHHC19 protein protein. 30 7.5
>BC001457-1|AAH01457.1| 331|Homo sapiens TruB pseudouridine (psi)
synthase homolog 2 (E. coli) protein.
Length = 331
Score = 129 bits (311), Expect = 1e-29
Identities = 73/224 (32%), Positives = 121/224 (54%), Gaps = 7/224 (3%)
Frame = +1
Query: 82 GALAYKALNGLVCVYKPPCVTIKQVQHTIITHLCRDLNAL-PNGPQEKRVEIIGAT--NE 252
G+ L+GL VYKPP + K ++ T+ L + LNA P P+++ ++G +E
Sbjct: 2 GSAGLSRLHGLFAVYKPPGLKWKHLRDTVELQLLKGLNARKPPAPKQRVRFLLGPMEGSE 61
Query: 253 PMSVCL----VPNYADNPLACGPRFINEDFRCSWATHXXXXXXXXXXXXINEGTKLTYLL 420
+ L VP++ ++PL CGP F + + + G +L +
Sbjct: 62 EKELTLTATSVPSFINHPLVCGPAFAH--LKVGVGHRLDAQASGVLVLGVGHGCRLLTDM 119
Query: 421 NTARLPRAYKLHGQLGKATDTYFWNGKTVERSMHKHVSREKIDRVVAHMQAAHQKAMYEL 600
A L + Y + G LGKATD + +G+ VE++ + HV+REK+DR++A +Q +HQKA+
Sbjct: 120 YNAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMY 179
Query: 601 SGVHMDSQTMYDLAVEGPIRPANSKIPVLYGIKCVHFDSPNFTL 732
S + + +Q Y++AV G IRP N ++ GI+C++F P F L
Sbjct: 180 SNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLL 223
>AL359091-2|CAI13485.1| 331|Homo sapiens TruB pseudouridine (psi)
synthase homolog 2 (E. coli) protein.
Length = 331
Score = 129 bits (311), Expect = 1e-29
Identities = 73/224 (32%), Positives = 121/224 (54%), Gaps = 7/224 (3%)
Frame = +1
Query: 82 GALAYKALNGLVCVYKPPCVTIKQVQHTIITHLCRDLNAL-PNGPQEKRVEIIGAT--NE 252
G+ L+GL VYKPP + K ++ T+ L + LNA P P+++ ++G +E
Sbjct: 2 GSAGLSRLHGLFAVYKPPGLKWKHLRDTVELQLLKGLNARKPPAPKQRVRFLLGPMEGSE 61
Query: 253 PMSVCL----VPNYADNPLACGPRFINEDFRCSWATHXXXXXXXXXXXXINEGTKLTYLL 420
+ L VP++ ++PL CGP F + + + G +L +
Sbjct: 62 EKELTLTATSVPSFINHPLVCGPAFAH--LKVGVGHRLDAQASGVLVLGVGHGCRLLTDM 119
Query: 421 NTARLPRAYKLHGQLGKATDTYFWNGKTVERSMHKHVSREKIDRVVAHMQAAHQKAMYEL 600
A L + Y + G LGKATD + +G+ VE++ + HV+REK+DR++A +Q +HQKA+
Sbjct: 120 YNAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMY 179
Query: 601 SGVHMDSQTMYDLAVEGPIRPANSKIPVLYGIKCVHFDSPNFTL 732
S + + +Q Y++AV G IRP N ++ GI+C++F P F L
Sbjct: 180 SNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLL 223
>AK001956-1|BAA92001.1| 331|Homo sapiens protein ( Homo sapiens
cDNA FLJ11094 fis, clone PLACE1005373, weakly similar to
TRNA PSEUDOURIDINE SYNTHASE B (EC 4.2.1.70). ).
Length = 331
Score = 129 bits (311), Expect = 1e-29
Identities = 73/224 (32%), Positives = 121/224 (54%), Gaps = 7/224 (3%)
Frame = +1
Query: 82 GALAYKALNGLVCVYKPPCVTIKQVQHTIITHLCRDLNAL-PNGPQEKRVEIIGAT--NE 252
G+ L+GL VYKPP + K ++ T+ L + LNA P P+++ ++G +E
Sbjct: 2 GSAGLSRLHGLFAVYKPPGLKWKHLRDTVELQLLKGLNARKPPAPKQRVRFLLGPMEGSE 61
Query: 253 PMSVCL----VPNYADNPLACGPRFINEDFRCSWATHXXXXXXXXXXXXINEGTKLTYLL 420
+ L VP++ ++PL CGP F + + + G +L +
Sbjct: 62 EKELTLTATSVPSFINHPLVCGPAFAH--LKVGVGHRLDAQASGVLVLGVGHGCRLLTDM 119
Query: 421 NTARLPRAYKLHGQLGKATDTYFWNGKTVERSMHKHVSREKIDRVVAHMQAAHQKAMYEL 600
A L + Y + G LGKATD + +G+ VE++ + HV+REK+DR++A +Q +HQKA+
Sbjct: 120 YNAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMY 179
Query: 601 SGVHMDSQTMYDLAVEGPIRPANSKIPVLYGIKCVHFDSPNFTL 732
S + + +Q Y++AV G IRP N ++ GI+C++F P F L
Sbjct: 180 SNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLL 223
>AF131848-1|AAD20059.1| 331|Homo sapiens Unknown protein.
Length = 331
Score = 129 bits (311), Expect = 1e-29
Identities = 73/224 (32%), Positives = 121/224 (54%), Gaps = 7/224 (3%)
Frame = +1
Query: 82 GALAYKALNGLVCVYKPPCVTIKQVQHTIITHLCRDLNAL-PNGPQEKRVEIIGAT--NE 252
G+ L+GL VYKPP + K ++ T+ L + LNA P P+++ ++G +E
Sbjct: 2 GSAGLSRLHGLFAVYKPPGLKWKHLRDTVELQLLKGLNARKPPAPKQRVRFLLGPMEGSE 61
Query: 253 PMSVCL----VPNYADNPLACGPRFINEDFRCSWATHXXXXXXXXXXXXINEGTKLTYLL 420
+ L VP++ ++PL CGP F + + + G +L +
Sbjct: 62 EKELTLTATSVPSFINHPLVCGPAFAH--LKVGVGHRLDAQASGVLVLGVGHGCRLLTDM 119
Query: 421 NTARLPRAYKLHGQLGKATDTYFWNGKTVERSMHKHVSREKIDRVVAHMQAAHQKAMYEL 600
A L + Y + G LGKATD + +G+ VE++ + HV+REK+DR++A +Q +HQKA+
Sbjct: 120 YNAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMY 179
Query: 601 SGVHMDSQTMYDLAVEGPIRPANSKIPVLYGIKCVHFDSPNFTL 732
S + + +Q Y++AV G IRP N ++ GI+C++F P F L
Sbjct: 180 SNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLL 223
>BC030601-1|AAH30601.1| 349|Homo sapiens TruB pseudouridine (psi)
synthase homolog 1 (E. coli) protein.
Length = 349
Score = 46.8 bits (106), Expect = 8e-05
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Frame = +1
Query: 388 INEGTK-LTYLLNTARLPRAYKLHGQLGKATDTYFWNGKTVERSMHKHVSREKIDRVVAH 564
I GTK LT +L+ ++ Y G+LGKATDT G+ E + +++E I+ ++
Sbjct: 132 IGSGTKMLTSMLSGSK---RYTAIGELGKATDTLDSTGRVTEEKPYDKITQEDIEGILQK 188
Query: 565 MQAAHQKAMYELSGVHMDSQTMYDLAVEGPIRPANSKIPV-LYGIKCVHFDSPNFTL 732
+ S + D Q + L G + A PV +Y I F P FTL
Sbjct: 189 FTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTL 245
>AL355340-1|CAH73219.1| 349|Homo sapiens TruB pseudouridine (psi)
synthase homolog 1 (E. coli) protein.
Length = 349
Score = 46.8 bits (106), Expect = 8e-05
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Frame = +1
Query: 388 INEGTK-LTYLLNTARLPRAYKLHGQLGKATDTYFWNGKTVERSMHKHVSREKIDRVVAH 564
I GTK LT +L+ ++ Y G+LGKATDT G+ E + +++E I+ ++
Sbjct: 132 IGSGTKMLTSMLSGSK---RYTAIGELGKATDTLDSTGRVTEEKPYDKITQEDIEGILQK 188
Query: 565 MQAAHQKAMYELSGVHMDSQTMYDLAVEGPIRPANSKIPV-LYGIKCVHFDSPNFTL 732
+ S + D Q + L G + A PV +Y I F P FTL
Sbjct: 189 FTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTL 245
>AK223567-1|BAD97287.1| 349|Homo sapiens TruB pseudouridine (psi)
synthase homolog 1 variant protein.
Length = 349
Score = 46.8 bits (106), Expect = 8e-05
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Frame = +1
Query: 388 INEGTK-LTYLLNTARLPRAYKLHGQLGKATDTYFWNGKTVERSMHKHVSREKIDRVVAH 564
I GTK LT +L+ ++ Y G+LGKATDT G+ E + +++E I+ ++
Sbjct: 132 IGSGTKMLTSMLSGSK---RYTAIGELGKATDTLDSTGRVTEEKPYDKITQEDIEGILQK 188
Query: 565 MQAAHQKAMYELSGVHMDSQTMYDLAVEGPIRPANSKIPV-LYGIKCVHFDSPNFTL 732
+ S + D Q + L G + A PV +Y I F P FTL
Sbjct: 189 FTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTL 245
>AF448144-1|AAL40350.1| 349|Homo sapiens TruB pseudouridine
synthase-like protein 1 protein.
Length = 349
Score = 46.8 bits (106), Expect = 8e-05
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Frame = +1
Query: 388 INEGTK-LTYLLNTARLPRAYKLHGQLGKATDTYFWNGKTVERSMHKHVSREKIDRVVAH 564
I GTK LT +L+ ++ Y G+LGKATDT G+ E + +++E I+ ++
Sbjct: 132 IGSGTKMLTSMLSGSK---RYTAIGELGKATDTLDSTGRVTEEKPYDKITQEDIEGILQK 188
Query: 565 MQAAHQKAMYELSGVHMDSQTMYDLAVEGPIRPANSKIPV-LYGIKCVHFDSPNFTL 732
+ S + D Q + L G + A PV +Y I F P FTL
Sbjct: 189 FTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTL 245
>X72755-1|CAA51284.1| 125|Homo sapiens Humig protein.
Length = 125
Score = 32.7 bits (71), Expect = 1.4
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +1
Query: 103 LNGLVCVYKPPCVTIKQVQHTIITHLCRDLNALPNGPQEKRVEIIGATNEPMSVCLVPNY 282
+ G V K C I Q TI +DL P +++EII + CL P+
Sbjct: 20 VQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEKIEIIATLKNGVQTCLNPDS 79
Query: 283 AD 288
AD
Sbjct: 80 AD 81
>BC095396-1|AAH95396.1| 125|Homo sapiens chemokine (C-X-C motif)
ligand 9 protein.
Length = 125
Score = 32.7 bits (71), Expect = 1.4
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +1
Query: 103 LNGLVCVYKPPCVTIKQVQHTIITHLCRDLNALPNGPQEKRVEIIGATNEPMSVCLVPNY 282
+ G V K C I Q TI +DL P +++EII + CL P+
Sbjct: 20 VQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEKIEIIATLKNGVQTCLNPDS 79
Query: 283 AD 288
AD
Sbjct: 80 AD 81
>BC063122-1|AAH63122.1| 125|Homo sapiens chemokine (C-X-C motif)
ligand 9 protein.
Length = 125
Score = 32.7 bits (71), Expect = 1.4
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +1
Query: 103 LNGLVCVYKPPCVTIKQVQHTIITHLCRDLNALPNGPQEKRVEIIGATNEPMSVCLVPNY 282
+ G V K C I Q TI +DL P +++EII + CL P+
Sbjct: 20 VQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEKIEIIATLKNGVQTCLNPDS 79
Query: 283 AD 288
AD
Sbjct: 80 AD 81
>BC022078-1|AAH22078.1| 282|Homo sapiens ZDHHC19 protein protein.
Length = 282
Score = 30.3 bits (65), Expect = 7.5
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -2
Query: 570 LHMGNYSVYLLSTNVFV--HRTFNSLAIPKICVSSFTKLPMKFVCSWESCCVQQIGQFCT 397
LH G+ L+ +V H F PK C F + P + C W + CV+ C
Sbjct: 87 LHQGSAEQGPLTVHVVWVNHGAFRLQWCPKCC---FHRPPRTYHCPWCNICVEDFDHHCK 143
Query: 396 FIN 388
++N
Sbjct: 144 WVN 146
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,066,467
Number of Sequences: 237096
Number of extensions: 2464688
Number of successful extensions: 3986
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3977
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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