Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3i01
         (736 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT024356-1|ABC86418.1|  317|Drosophila melanogaster IP08469p pro...   145   5e-35
AE013599-142|AAM68342.1|  317|Drosophila melanogaster CG7849-PB,...   145   5e-35
AE013599-143|AAF57283.2|  246|Drosophila melanogaster CG7849-PA,...   107   1e-23
AE014296-656|AAN11565.1|  717|Drosophila melanogaster CG12010-PB...    29   6.6  
AE014296-655|AAF47769.1|  736|Drosophila melanogaster CG12010-PA...    29   6.6  

>BT024356-1|ABC86418.1|  317|Drosophila melanogaster IP08469p
           protein.
          Length = 317

 Score =  145 bits (352), Expect = 5e-35
 Identities = 76/230 (33%), Positives = 127/230 (55%), Gaps = 7/230 (3%)
 Frame = +1

Query: 64  MAKLCTGALAYKALNGLVCVYKPPCVTIKQVQHTIITHLCRDLNALPNGPQEK---RVEI 234
           + K+   A  +K +NG++ VYKP  + +K V++ I++++C+ LN +      K    + +
Sbjct: 3   LTKVYDAATVFKHMNGILNVYKPSGMKVKHVRNAILSNICKGLNEMEQRKPRKLQENISL 62

Query: 235 IG----ATNEPMSVCLVPNYADNPLACGPRFINEDFRCSWATHXXXXXXXXXXXXINEGT 402
           +G    A +   ++    + +D+ L+ GPR++  D  C+  +             IN G 
Sbjct: 63  LGTGTAADHVLHNIGEQTDLSDHLLSTGPRYLPRDLICTTVSSLGDHTSGVLLFGINRGA 122

Query: 403 KLTYLLNTARLPRAYKLHGQLGKATDTYFWNGKTVERSMHKHVSREKIDRVVAHMQAAHQ 582
             +  +   R  R Y L G LG AT+    + + + RS H+HVS ++I  + A MQA+HQ
Sbjct: 123 GQSSSIRKNRPVRVYHLIGHLGIATENNLPDSRVIMRSNHRHVSADRISSLAASMQASHQ 182

Query: 583 KAMYELSGVHMDSQTMYDLAVEGPIRPANSKIPVLYGIKCVHFDSPNFTL 732
           + M+EL GV + +Q  Y+LA  G +RPA+   PV+YGIK +HFD P+FTL
Sbjct: 183 RKMFELCGVDLQTQEAYELACRGLLRPADDSQPVVYGIKLIHFDRPHFTL 232


>AE013599-142|AAM68342.1|  317|Drosophila melanogaster CG7849-PB,
           isoform B protein.
          Length = 317

 Score =  145 bits (352), Expect = 5e-35
 Identities = 76/230 (33%), Positives = 127/230 (55%), Gaps = 7/230 (3%)
 Frame = +1

Query: 64  MAKLCTGALAYKALNGLVCVYKPPCVTIKQVQHTIITHLCRDLNALPNGPQEK---RVEI 234
           + K+   A  +K +NG++ VYKP  + +K V++ I++++C+ LN +      K    + +
Sbjct: 3   LTKVYDAATVFKHMNGILNVYKPSGMKVKHVRNAILSNICKGLNEMEQRKPRKLQENISL 62

Query: 235 IG----ATNEPMSVCLVPNYADNPLACGPRFINEDFRCSWATHXXXXXXXXXXXXINEGT 402
           +G    A +   ++    + +D+ L+ GPR++  D  C+  +             IN G 
Sbjct: 63  LGTGTAADHVLHNIGEQTDLSDHLLSTGPRYLPRDLICTTVSSLGDHTSGVLLFGINRGA 122

Query: 403 KLTYLLNTARLPRAYKLHGQLGKATDTYFWNGKTVERSMHKHVSREKIDRVVAHMQAAHQ 582
             +  +   R  R Y L G LG AT+    + + + RS H+HVS ++I  + A MQA+HQ
Sbjct: 123 GQSSSIRKNRPVRVYHLIGHLGIATENNLPDSRVIMRSNHRHVSADRISSLAASMQASHQ 182

Query: 583 KAMYELSGVHMDSQTMYDLAVEGPIRPANSKIPVLYGIKCVHFDSPNFTL 732
           + M+EL GV + +Q  Y+LA  G +RPA+   PV+YGIK +HFD P+FTL
Sbjct: 183 RKMFELCGVDLQTQEAYELACRGLLRPADDSQPVVYGIKLIHFDRPHFTL 232


>AE013599-143|AAF57283.2|  246|Drosophila melanogaster CG7849-PA,
           isoform A protein.
          Length = 246

 Score =  107 bits (258), Expect = 1e-23
 Identities = 51/115 (44%), Positives = 72/115 (62%)
 Frame = +1

Query: 388 INEGTKLTYLLNTARLPRAYKLHGQLGKATDTYFWNGKTVERSMHKHVSREKIDRVVAHM 567
           IN G   +  +   R  R Y L G LG AT+    + + + RS H+HVS ++I  + A M
Sbjct: 47  INRGAGQSSSIRKNRPVRVYHLIGHLGIATENNLPDSRVIMRSNHRHVSADRISSLAASM 106

Query: 568 QAAHQKAMYELSGVHMDSQTMYDLAVEGPIRPANSKIPVLYGIKCVHFDSPNFTL 732
           QA+HQ+ M+EL GV + +Q  Y+LA  G +RPA+   PV+YGIK +HFD P+FTL
Sbjct: 107 QASHQRKMFELCGVDLQTQEAYELACRGLLRPADDSQPVVYGIKLIHFDRPHFTL 161



 Score = 37.1 bits (82), Expect = 0.025
 Identities = 13/41 (31%), Positives = 28/41 (68%)
 Frame = +1

Query: 64  MAKLCTGALAYKALNGLVCVYKPPCVTIKQVQHTIITHLCR 186
           + K+   A  +K +NG++ VYKP  + +K V++ I++++C+
Sbjct: 3   LTKVYDAATVFKHMNGILNVYKPSGMKVKHVRNAILSNICK 43


>AE014296-656|AAN11565.1|  717|Drosophila melanogaster CG12010-PB,
           isoform B protein.
          Length = 717

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 151 QVQHTIITHLCRDLNALPNGPQEKRVEIIGATNEP 255
           QVQ  I++ L  ++N +  G  ++ + ++ ATN P
Sbjct: 569 QVQLRILSTLLTEMNGIVGGGSQQHILVVAATNRP 603


>AE014296-655|AAF47769.1|  736|Drosophila melanogaster CG12010-PA,
           isoform A protein.
          Length = 736

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 151 QVQHTIITHLCRDLNALPNGPQEKRVEIIGATNEP 255
           QVQ  I++ L  ++N +  G  ++ + ++ ATN P
Sbjct: 588 QVQLRILSTLLTEMNGIVGGGSQQHILVVAATNRP 622


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,148,707
Number of Sequences: 53049
Number of extensions: 787870
Number of successful extensions: 1920
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1918
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3314233461
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)