Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3i01
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81139-8|CAB03483.2|  361|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81062-15|CAB02950.2|  361|Caenorhabditis elegans Hypothetical p...    29   3.4  
AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ...    28   6.0  
U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z81139-8|CAB03483.2|  361|Caenorhabditis elegans Hypothetical
           protein W05H5.7 protein.
          Length = 361

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 585 FLVCCLHMGNYSVYLLSTNVFVHRTFNSLAIPKICV 478
           F + C H+   S+Y++      HR    L IP  CV
Sbjct: 39  FYISCFHLMTISLYVMLKVQIFHRNLYILYIPMFCV 74


>Z81062-15|CAB02950.2|  361|Caenorhabditis elegans Hypothetical
           protein W05H5.7 protein.
          Length = 361

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 585 FLVCCLHMGNYSVYLLSTNVFVHRTFNSLAIPKICV 478
           F + C H+   S+Y++      HR    L IP  CV
Sbjct: 39  FYISCFHLMTISLYVMLKVQIFHRNLYILYIPMFCV 74


>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
           protein F28H6.4 protein.
          Length = 1000

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 100 LYTPMLQYIISPFIMPVPNK 41
           LY+PM Q I+ P + PVP K
Sbjct: 725 LYSPMRQEIVQPKLTPVPTK 744


>U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical
           protein R57.1b protein.
          Length = 576

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = +1

Query: 487 FWNGKTVERSMHKHVSREKIDRVVAHMQAAHQKAMYELSGVHMDS 621
           F NG+ +  ++H  +  ++I  V+ +++ + +   Y + G H D+
Sbjct: 327 FVNGEKLSINVHSELRTKRIRNVIGYIRGSEEPDSYIMLGNHFDA 371


>U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical
           protein R57.1c protein.
          Length = 751

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = +1

Query: 487 FWNGKTVERSMHKHVSREKIDRVVAHMQAAHQKAMYELSGVHMDS 621
           F NG+ +  ++H  +  ++I  V+ +++ + +   Y + G H D+
Sbjct: 327 FVNGEKLSINVHSELRTKRIRNVIGYIRGSEEPDSYIMLGNHFDA 371


>U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical
           protein R57.1a protein.
          Length = 770

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = +1

Query: 487 FWNGKTVERSMHKHVSREKIDRVVAHMQAAHQKAMYELSGVHMDS 621
           F NG+ +  ++H  +  ++I  V+ +++ + +   Y + G H D+
Sbjct: 346 FVNGEKLSINVHSELRTKRIRNVIGYIRGSEEPDSYIMLGNHFDA 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,201,390
Number of Sequences: 27780
Number of extensions: 411408
Number of successful extensions: 853
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)