Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3i01
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   3.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.1  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +3

Query: 312 VHKRRLSLQLGYSFRVLQQWSSV 380
           +H+R+ S  L +S  V+ +W  +
Sbjct: 22  IHQRKSSKNLEHSMNVIHEWKYI 44


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 238 GATNEPMSVCLVPNYADNP 294
           GAT+EP    ++P  AD+P
Sbjct: 312 GATSEPFPFLMLPLGADDP 330


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 394 EGTKLTYLLNTARLPRAYKLHGQLGKATDTYFWNGK 501
           +G K T  L+ + L R +K         DTYF+NGK
Sbjct: 69  QGGKETLALSISMLARIWK--------PDTYFYNGK 96


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +3

Query: 315 HKRRLSLQLGYSFRVLQQWSSV 380
           H+R+ +  L +S +V+ +W  +
Sbjct: 25  HQRKSANNLAHSMKVIYEWKHI 46


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 469 KATDTYFWNGKTVERSMHKHVSR 537
           K + ++ W G + + S H+ VSR
Sbjct: 700 KRSGSHSWEGDSFKVSKHEEVSR 722


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 585 FLVCCLHMGNYSVYLLSTNVFVHRTFNSLAIPKI 484
           FL+ CL   + S+  L++ +FV R   + A+PK+
Sbjct: 72  FLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKL 105


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +1

Query: 478 DTYFWNGK 501
           DTYF+NGK
Sbjct: 121 DTYFYNGK 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,830
Number of Sequences: 438
Number of extensions: 4807
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)