Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3h19
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   2.5  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    27   2.5  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    27   3.3  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   4.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.6  
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    25   7.6  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   10.0 
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    25   10.0 

>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 399 PGLNLRTLSTFGHHRNRLCMVKLTGY 322
           P ++L  +  FG   N +CM +L GY
Sbjct: 234 PSISLENVLAFGDGANDVCMFELAGY 259


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 429 EESIAKAVRYSNVVINLVGRDYETKNFKYND 521
           +ESI+ +   SN+ ++L  R Y+TK  K+N+
Sbjct: 166 KESISSSTN-SNIKLHLAARKYQTKPEKFNE 195


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 672 PNTCLFSKQTVSSGQEVSDVLQHLNKTD 589
           PN C+FS   V  G   +D+L H ++ +
Sbjct: 421 PNPCMFSINDVVFGVSTNDILLHTSREE 448


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = +3

Query: 417 HLLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLS 596
           H L   S AK+     +  +  G D  + N K  +VH++ V +IA     EG+ R     
Sbjct: 58  HRLSSVSYAKSRTRLELTSSSHGSDTRSFNDKTKNVHLERVEKIASEWDPEGL-RVCFWD 116

Query: 597 YLNAEEHPKPLVLK--KPSAWKISKYL 671
            +N ++ P  L+L+  +   W +   L
Sbjct: 117 AVNCDD-PDGLLLRFLRARKWNVEAAL 142


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 261 TVFGCTGFVGRYVCNKLGKIGT 326
           T   CTG V  + C+ L KIG+
Sbjct: 691 TSVNCTGIVLSFCCDNLAKIGS 712


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 456 YSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLS 596
           +  VVI+     +      Y +V+VDG   I + C++  V+  ++ S
Sbjct: 70  HPRVVIHTASPVHNLARDIYFEVNVDGTANIIKACQKFNVDALVYTS 116


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 390 LGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 497
           L +   +P HL+ EE    A +Y N + ++   +YE
Sbjct: 272 LQKAFLSPDHLIVEEDFYNASKYLNAISDIPFLNYE 307


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 4   YTLALSLSILNGSIINC 54
           Y+LAL +SI +GS+I C
Sbjct: 397 YSLALCISIFDGSLIFC 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,631
Number of Sequences: 5004
Number of extensions: 53630
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)