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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3h18
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    46   5e-06
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    38   0.001
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    34   0.023
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    33   0.031
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    31   0.12 
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    31   0.16 
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    30   0.29 
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    29   0.50 
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    29   0.66 
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    29   0.88 
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    27   2.0  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    27   2.0  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    27   3.5  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.7  
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    26   4.7  
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    26   4.7  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   6.2  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   6.2  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   6.2  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    25   8.2  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   8.2  

>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 4/129 (3%)
 Frame = +3

Query: 342 AFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCRLIQG 521
           AF++GY     P  ++ Q+F    P+S  L V  V+      +   + + G    R++ G
Sbjct: 108 AFYLGYLVFEFPASLLLQRF----PLSKTLCVFLVIWGFLLCMTSVANYPGFIALRVLLG 163

Query: 522 MTQAALYPSMHTMLGKWAPLSERG-RLSTYVY---TGSQFGTILIFEISGLFAGTPVLGW 689
           M ++A  P    +  +W   SE+  R S +V     G   G+ + + ++      P+ GW
Sbjct: 164 MMESAASPGFILLTAQWYKRSEQQLRTSVWVAFNGLGQILGSCMAYGLAKR-TSLPMRGW 222

Query: 690 PAIFWLCGI 716
             IF +CG+
Sbjct: 223 KLIFIICGV 231


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
 Frame = +3

Query: 345 FFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCRLIQGM 524
           F+  Y T   P  ++ +KFG  + +S  +    +V+I + ++  +  W  L   RL+ G+
Sbjct: 88  FYATYITAETPSVLLVKKFGPHYYLSAMIIGWSLVTIFTCFVRHY--W-SLVLTRLLLGI 144

Query: 525 TQAALYPSMHTMLGKWAPLSERGRLSTYVYTGS----QFGTILIFEISGL--FAGTPVLG 686
            +   +P +   +       E+G+   Y+Y  S     FG ++   ++ +   +G P  G
Sbjct: 145 CEGGFFPCLSLYISMTYKREEQGKRLAYLYVCSCFSGAFGGLIATGLTKIPKSSGLPNWG 204

Query: 687 W 689
           W
Sbjct: 205 W 205


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 26/128 (20%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
 Frame = +3

Query: 345 FFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCRLIQGM 524
           F+V Y  +  P  ++ ++      ++   F   +  + S ++   S + GL   RLI G+
Sbjct: 105 FYVLYILVETPSVVLVKRIKASRMLAFISFAWSMTVLFSGFM---SSYGGLIATRLILGL 161

Query: 525 TQAALYPSMHTMLGKWAPLSERGRLSTYVYTGS----QFGTILIFEISGLFAGTPVLGWP 692
            +  L+P+++  L       E+ +  +Y++  +     FG +  + +  + AG    GW 
Sbjct: 162 LEGCLFPALNLYLTTHYTRKEQCQRLSYLFASAGLAGAFGGLFAYALEQVHAGNKE-GWQ 220

Query: 693 AIFWLCGI 716
            I+ + G+
Sbjct: 221 WIYIVEGL 228


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 33.5 bits (73), Expect = 0.031
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 4/132 (3%)
 Frame = +3

Query: 330 MILFAFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCR 509
           +++  F++ +     P   + ++FG    +   +   G +S+    +  F G M +   R
Sbjct: 100 IMISIFYIPFVLCAFPFSYLYKRFGAARILPFFMLSFGAMSLCQAAVKNFGGMMAV---R 156

Query: 510 LIQGMTQAALYPSMHTMLGKWAPLSERGRLSTYVY----TGSQFGTILIFEISGLFAGTP 677
              GM ++A+ P +   L  +   +E  R     Y      S FG +L + +  +  G  
Sbjct: 157 WFLGMAESAVLPGVVYYLTTFYRRTELARRLAIFYAAANVSSAFGGLLAYGVFHI-KGGK 215

Query: 678 VLGWPAIFWLCG 713
           + GW  +F + G
Sbjct: 216 LQGWQYLFLIEG 227


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 1/111 (0%)
 Frame = +3

Query: 336 LFAFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSG-WMGLATCRL 512
           L  F+VGY    +P  ++      +  +S      GVV      +    G        R 
Sbjct: 133 LALFYVGYIIFEVPSNLMMAFIEPRIWVSRIQLTIGVVGACHAVLGTKHGNAQSYVALRF 192

Query: 513 IQGMTQAALYPSMHTMLGKWAPLSERGRLSTYVYTGSQFGTILIFEISGLF 665
             G+ ++ L+P +   + +W      G+   + YT +Q     +  +S  F
Sbjct: 193 FLGVAESGLWPGLAYYMSRWYRGKHLGKRIGWYYTAAQIAAAAVSLVSAGF 243


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 504 CRLIQGMTQAALYPSMHTMLGKWAPLSERGRLSTYVYTGSQFGTILIFEI-SGLFAGTPV 680
           CR + G+  A L P+   +LG+  P  ++  L   ++  +     L+  + SG+FA   +
Sbjct: 144 CRALTGIAPAFLLPNALALLGRVYPPGKKKNLIFALFGATAPNGFLLGSVFSGIFA--QL 201

Query: 681 LGWPAIFWLCGI 716
             WP  +W   I
Sbjct: 202 SWWPWTYWTTAI 213


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
 Frame = +3

Query: 351 VGYTTMMIPMGIIAQKFGGKF----PISVALFVNGVVSIISPWIPLFSG-WMGLATCRLI 515
           +G     I  G +   FG KF     + V +    +V  +   IP   G  M +   R +
Sbjct: 99  IGNVFGQILFGFMGDFFGRKFVYGKEMIVVIIATVLVIALPKSIPTPLGKMMWIFAWRWL 158

Query: 516 QGMTQAALYPSMHTMLGKWAPLSERGRLSTYVYTGSQFGTI 638
            G+     YP   T+  + + LS RG L + V++   FGT+
Sbjct: 159 LGLGIGGDYPMSATITSERSLLSRRGTLLSIVFSFQGFGTL 199


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 5/129 (3%)
 Frame = +3

Query: 345 FFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCRLIQGM 524
           F  GY    +P     Q+   +   SV   + G+++I S  +      M L   R    +
Sbjct: 76  FTCGYIIGQLPGSYALQRVPARLWFSVMNILWGLMTIFSFAVHSVRALMIL---RFFMAV 132

Query: 525 TQAALYPSMHTMLGKWAPLSE----RGRLSTYVYTGSQFGTILIFEISGLFAGTPVL-GW 689
            +A+ +   H +LG W   SE     G  S     G+ F   L   +     G   L GW
Sbjct: 133 AEASTFAGTHYILGAWYKESELCKRAGIFSASGLVGTMFAGYLQTAVHSSLNGKGGLSGW 192

Query: 690 PAIFWLCGI 716
             +F + GI
Sbjct: 193 RWLFIIDGI 201


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 26/138 (18%), Positives = 51/138 (36%)
 Frame = +3

Query: 276 ISAWSVYRTYNWNKSTQEMILFAFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSI 455
           + A ++   ++ + +   + +  F  GY    I    +++  G K P+ + +F  G+ +I
Sbjct: 156 VPAEAITTIFHISLTVSLLTMTVFLCGYIAGPIVWAPLSELSGRKLPLLIGMFGFGIFNI 215

Query: 456 ISPWIPLFSGWMGLATCRLIQGMTQAALYPSMHTMLGKWAPLSERGRLSTYVYTGSQFGT 635
               + +      +  CR   G   +A    +            RG   T ++    F  
Sbjct: 216 S---VAVAKDIQTIMMCRFFSGFFASAPLTVVAAAFADMYSNKHRGTAIT-IFAALVFDG 271

Query: 636 ILIFEISGLFAGTPVLGW 689
            L+  I G F     LGW
Sbjct: 272 PLVSPIIGGFLTKSYLGW 289


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 4/133 (3%)
 Frame = +3

Query: 330 MILFAFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCR 509
           +I   F+V +    +P  ++ +K   K  ++  +    + +I + +   F G   L   R
Sbjct: 98  IIASVFYVTFILFEMPTTLLMKKVQPKRMLAFIVISYSLTTIFTGFCHNFGG---LLAAR 154

Query: 510 LIQGMTQAALYPSMHTMLGKWAPLSERGRLSTYVYTGS----QFGTILIFEISGLFAGTP 677
           L+ G  +A L+P +   L       E      Y++  S     FG +  + +  +     
Sbjct: 155 LVLGFCEAGLFPCLALYLTMIYSRVELAPRIAYLFASSALSGAFGGLFAYAVLHMDGVGG 214

Query: 678 VLGWPAIFWLCGI 716
             GW  +F + G+
Sbjct: 215 FAGWRWLFIIEGL 227


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 2/169 (1%)
 Frame = +3

Query: 189 VAITGHAVTESELCSNVSTSENTSCVTEEISAWSVYRTYNWNKSTQEMILFAFFVGYTTM 368
           VA+ G A     LC+   +S  +  V E +  + V RT         + +  + +G+ + 
Sbjct: 77  VAVMGSAC----LCAGFGSSIFSGAVPEVMVKFHVCRT------VALLGISLYVLGFASG 126

Query: 369 MIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCRLIQGMTQAALYPS 548
            +    + + FG + P+ +A+F+  +  I    +        +  CR   G   ++    
Sbjct: 127 PVVWAPMCELFGRRRPMIIAVFIFCIFHIA---VATAKDIQTVMICRFFCGFFGSS---P 180

Query: 549 MHTMLGKWAPL-SERGR-LSTYVYTGSQFGTILIFEISGLFAGTPVLGW 689
           + T+ G ++ + S R R L   VY+   F   L+  I G F G   LGW
Sbjct: 181 ITTVAGSFSDMFSARTRGLVIAVYSAIIFNGPLMSPIVGGFIGKSYLGW 229


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 591 GRLSTYVYTGSQFGTILIFEISGLFAGTPVLGWPAI 698
           G ++T +Y+G Q  T ++ E SG   GT  +  PA+
Sbjct: 219 GTVTTTIYSGDQEYTTILAEASGTVPGTVEVIEPAV 254


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
 Frame = +3

Query: 351 VGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIP-----LFSGWMGLATCRLI 515
           +G     +  G +   FG KF     + V  + +I+   +P       +  M L   R++
Sbjct: 94  IGNIMGQLLFGFLGDFFGRKFVYGKEMMVVIIATILIICLPDRIPTPTAKMMWLFAFRVM 153

Query: 516 QGMTQAALYPSMHTMLGKWAPLSERGRLSTYVYTGSQFGTI 638
            G+     YP   ++  + + ++ RG L  ++++   +GT+
Sbjct: 154 LGIGIGGDYPMSASITSEQSLINRRGALLAWIFSNQGWGTL 194


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +3

Query: 375  PMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCRLIQGMTQA 533
            P G++A +FG K  + +   V G+  +   W  + S       C+  +   QA
Sbjct: 1526 PFGLVAVEFGRKGTLGIGAKVGGLGQMPGWWYTIESNTTAHLLCQFEEACRQA 1578


>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 644 DQDCSELRSRVDISAQSSSFTQRCPFTQHCVHARIES 534
           D D + +     ++    S TQR P     VHAR++S
Sbjct: 261 DHDTNNVAEEAQMTDLKDSETQRVPSAPDFVHARLQS 297


>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -1

Query: 132 VPKLECGGCQSLLVPEFLVMTLH--IC-HPLVPPCR 34
           +P + CG C++ L  E    T+H   C HP  P C+
Sbjct: 68  IPCVICGACKNSLTVEEYRSTVHCKYCNHPFNPKCK 103


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 585 ERGRLSTYVYTGSQFGTILIFEISGLFAGTPVLGWPA 695
           E G ++T VY+G+Q  T  +   SG  +GT  +  PA
Sbjct: 612 EAGTVTTTVYSGTQEYTTTLATASGTVSGTVEVIEPA 648



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 585 ERGRLSTYVYTGSQFGTILIFEISGLFAGT 674
           E G ++T VY+G+Q  T  +   SG  +GT
Sbjct: 180 EAGTVTTTVYSGTQEYTTTLATASGTVSGT 209



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 585 ERGRLSTYVYTGSQFGTILIFEISGLFAGT 674
           E G ++T VY+G+Q  T  +   SG  +GT
Sbjct: 252 EAGTVTTTVYSGTQEYTTTLATASGTVSGT 281



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 585 ERGRLSTYVYTGSQFGTILIFEISGLFAGT 674
           E G ++T VY+G+Q  T  +   SG  +GT
Sbjct: 324 EAGTVTTTVYSGTQEYTTTLATASGTVSGT 353



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 585 ERGRLSTYVYTGSQFGTILIFEISGLFAGT 674
           E G ++T VY+G+Q  T  +   SG  +GT
Sbjct: 396 EAGTVTTTVYSGTQEYTTTLATASGTVSGT 425



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 585 ERGRLSTYVYTGSQFGTILIFEISGLFAGT 674
           E G ++T VY+G+Q  T  +   SG  +GT
Sbjct: 468 EAGTVTTTVYSGTQEYTTTLATASGTVSGT 497



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 585 ERGRLSTYVYTGSQFGTILIFEISGLFAGT 674
           E G ++T VY+G+Q  T  +   SG  +GT
Sbjct: 540 EAGTVTTTVYSGTQEYTTTLATASGTVSGT 569


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +3

Query: 558 MLGKWAP---LSERGRLSTYVYTGSQFGTILIF 647
           +LGKW     + +  +L+ YVY G+QF   + F
Sbjct: 134 LLGKWESKLKIIKFNKLAKYVYEGNQFFLFIFF 166


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
 Frame = -2

Query: 572 PFTQHCVHARIESCLCHPLNQS----TCGQ---THPS 483
           PFT HC H     CL + L +S    TC Q   T PS
Sbjct: 95  PFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYTQPS 131


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
 Frame = +3

Query: 351 VGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPL-----FSGWMGLATCRLI 515
           +G     +  G +   FG KF     + +  + +I+   +P       S  M +   R +
Sbjct: 104 IGNIFGQLMFGFMGDFFGRKFVYGKEMIIVIIATILLIAMPKSIHSPLSKMMWVFCWRWL 163

Query: 516 QGMTQAALYPSMHTMLGKWAPLSERGRLSTYVYTGSQFGTI 638
            G+     YP    +  + + L+ RG L + ++    FGT+
Sbjct: 164 LGVGIGGDYPMSAAITSERSKLNRRGTLISLIFAFQGFGTL 204


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 46   YQRMTNMKGHHQKFRHQK 99
            YQ+  N KGHH+K   QK
Sbjct: 972  YQQSINQKGHHRKEDPQK 989


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,192,610
Number of Sequences: 5004
Number of extensions: 69537
Number of successful extensions: 200
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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