Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3h17
(761 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 74 3e-14
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 66 4e-12
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 65 9e-12
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 65 1e-11
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po... 56 7e-09
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po... 54 2e-08
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p... 53 4e-08
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 52 7e-08
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po... 52 9e-08
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 51 2e-07
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 48 1e-06
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 46 8e-06
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M... 38 0.001
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 34 0.019
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 33 0.044
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 31 0.18
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 27 2.9
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 27 2.9
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 27 3.9
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 26 5.1
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 26 5.1
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 26 5.1
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ... 26 6.7
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy... 26 6.7
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 25 8.9
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 73.7 bits (173), Expect = 3e-14
Identities = 39/146 (26%), Positives = 77/146 (52%), Gaps = 2/146 (1%)
Frame = +3
Query: 327 LKGKVAIVTASTEGIGYAIAKRLGHEGASV-VISSRKEDNVENAVKSLRSDGITVEGIVC 503
LKGK ++T + GIG++IAK G++V ++ R + +E A + G+ + C
Sbjct: 7 LKGKTTLITGGSGGIGFSIAKAFAAAGSNVGLLYGRNKKALEYAAELRDKHGVQAKAYSC 66
Query: 504 HVANSDHRKKLFEVAKSKFGG-LDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWL 680
+ N + A + GG LD++++NA + + + +E +W K+ IN+ ++
Sbjct: 67 PIENRSAVIETTNQAVEELGGRLDVMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYY 126
Query: 681 LAKEAYPELIKRGGGNIVFISSMAAY 758
A+ A K+G G+++F +SM+ +
Sbjct: 127 TAQAAGHHFKKQGKGSLIFTASMSGH 152
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 66.5 bits (155), Expect = 4e-12
Identities = 40/143 (27%), Positives = 72/143 (50%)
Frame = +3
Query: 327 LKGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCH 506
LKGK +V + +GIG++IA G +V+I+ D E A K G+ V +
Sbjct: 19 LKGKNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTTDPTEKAKKLAEETGVQVHTLKID 78
Query: 507 VANSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLA 686
++ SD + E + F + ++V+NA + P +L++ ++K+ IN S + +A
Sbjct: 79 ISRSDTVEAGVEEIQKIFKEIHVVVANAGM-PFRRSVLDSPPHEFEKVMNINTNSVYRVA 137
Query: 687 KEAYPELIKRGGGNIVFISSMAA 755
K+G GN++ +SM+A
Sbjct: 138 YYMGKIFKKQGFGNLIATASMSA 160
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 65.3 bits (152), Expect = 9e-12
Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 5/150 (3%)
Frame = +3
Query: 324 RLKGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVC 503
+L K ++T GIG A A EG+ +VIS E+ + V D I EG C
Sbjct: 39 KLAEKKTLLTGGDSGIGKAAAVMFAREGSDLVISCLPEERDDAEVTR---DLIEREGRNC 95
Query: 504 HV-----ANSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVK 668
+ SD+ + L + A K G +D+LV+N A I + D++ WD F+ N+
Sbjct: 96 WIWEGKLDKSDNCRDLVDFALKKLGWIDVLVNNIAYQQVAQSIEDIDDEQWDLTFKTNIF 155
Query: 669 SSWLLAKEAYPELIKRGGGNIVFISSMAAY 758
S + + K A + + G +IV SS+ AY
Sbjct: 156 SFFWVTKAAISHM--KSGSSIVNCSSINAY 183
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 64.9 bits (151), Expect = 1e-11
Identities = 46/140 (32%), Positives = 68/140 (48%)
Frame = +3
Query: 336 KVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVAN 515
KV ++T S++GIG A A+ L + + +S +E + + V+G V V
Sbjct: 7 KVILLTGSSKGIGLATAEALQKKAKVIAVSRSLTPELETLLIQNPDSFVHVKGDVTEVG- 65
Query: 516 SDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLAKEA 695
K E A KFG LD ++ NA V ++ I + D W K+F+IN S K A
Sbjct: 66 ----KASIETAIKKFGKLDSVILNAGVLEPIAKIADADINEWRKLFDINFFSVVETVKYA 121
Query: 696 YPELIKRGGGNIVFISSMAA 755
P L ++ G IV +SS AA
Sbjct: 122 IPHL-RKTKGTIVIVSSGAA 140
>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 55.6 bits (128), Expect = 7e-09
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
Frame = +3
Query: 336 KVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVAN 515
K+ + GIG ++ K L + +VV +S ++ ++ V I V++
Sbjct: 6 KIYFIAGGNRGIGLSLVKELSNRKGTVVFASARKPGAATKLQEWSKSHSNVHIIKLDVSS 65
Query: 516 SDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLAKEA 695
+ + + +D+L N+AV + P++ T + VW+ ++ NV + +
Sbjct: 66 LESANEAAQEVTKVVDAVDVLWVNSAVFHSFGPVVNTPDDVWNSHYKTNVLGPIHVYQAF 125
Query: 696 YPELIKRGGGN-IVFISSMA 752
YP LIK+G IVF SS+A
Sbjct: 126 YP-LIKKGRSKIIVFTSSLA 144
>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 54.0 bits (124), Expect = 2e-08
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Frame = +3
Query: 336 KVAIVTASTEGIGYAIAKRLG-HEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVA 512
KV + GIG ++ K L EG +V S+RK + + +S V+ + V
Sbjct: 6 KVYFIAGGNRGIGLSLVKELSSREGTTVFASARKPEAATELQEWSKSHP-NVKTVELDVT 64
Query: 513 NSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLAKE 692
+ + + G+D+L N+ + + ++E E+VW+ ++ NV + K
Sbjct: 65 SQQSANEAAQSVAKAVDGIDVLWLNSGICQSYYTVMEAPEEVWNAHYQTNVLGPIHVFKA 124
Query: 693 AYPELIKRGGGNIVFISS 746
YP L K+ ++F SS
Sbjct: 125 FYPLLTKKKTRQVIFTSS 142
>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 254
Score = 53.2 bits (122), Expect = 4e-08
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 1/142 (0%)
Frame = +3
Query: 333 GKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVA 512
G V ++ GIG ++ K L ++ V +S + + +K V I V
Sbjct: 6 GIVYVIVGGNRGIGLSLVKELSNKEGVTVFASARGPGSASELKDWSKTHSNVHIIKLDVT 65
Query: 513 NSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLAKE 692
+ K + +D+L N+ ++ + P+L+T +++W ++ NV + +
Sbjct: 66 SLRSAKDAAMQVEKVVKCIDVLWVNSGISKSFQPVLKTSDELWMSHYQTNVLGP-IHVYQ 124
Query: 693 AYPELIKRGG-GNIVFISSMAA 755
A+ L+K G NIVF SSMAA
Sbjct: 125 AFYHLLKEGKLKNIVFTSSMAA 146
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 52.4 bits (120), Expect = 7e-08
Identities = 39/142 (27%), Positives = 65/142 (45%)
Frame = +3
Query: 327 LKGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCH 506
LKGK A+V GIG+AI GA+ I + A + +++G+ C
Sbjct: 19 LKGKNAVVFGGARGIGHAICSVFAEAGANAFIVYNTTPGEKAAKEIAQANGVKTYTCKCD 78
Query: 507 VANSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLA 686
V + F + F +DI+V N + S I T E+ ++I +N+ + +A
Sbjct: 79 VTIPKEVEHAFAEIQKVFDTIDIVVPNNGICTGKSAIDMTYEEFANEI-NVNLLGVFNVA 137
Query: 687 KEAYPELIKRGGGNIVFISSMA 752
A P K+G G++V +SM+
Sbjct: 138 HNAGPIFQKQGHGSLVATASMS 159
>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 52.0 bits (119), Expect = 9e-08
Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Frame = +3
Query: 336 KVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVAN 515
K+ + GIG ++ K L + +VV +S ++ ++ V I +++
Sbjct: 6 KIYFIAGGNRGIGLSLVKELSNREGTVVFASARKPEAATELQEWSKSHSNVHIIKLDISS 65
Query: 516 SDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLAKEA 695
+ + + G +D+L N+ + + + +L T + VW+ ++ NV + +
Sbjct: 66 LESANEAAQEVAKAVGKVDVLWVNSGIFHSFNTVLNTPDDVWNSHYKTNVLGPIHVYQAF 125
Query: 696 YPELIKRGGGN-IVFISSM 749
YP L+K+G IVF SS+
Sbjct: 126 YP-LVKKGESKIIVFTSSL 143
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 51.2 bits (117), Expect = 2e-07
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 9/191 (4%)
Frame = +3
Query: 216 STHGSLRMMFRLKFIRSLMNTKMSKTPNFVRANHNDRLKGKVAIVTASTEGIGYAIAKRL 395
S G L + + +L TP + + D L GKVA+VT S+ GIGY A L
Sbjct: 4 SFQGLLNRVNESAIVNTLKEYTGLNTPKWTFNDIPD-LTGKVALVTGSSGGIGYVTALEL 62
Query: 396 GHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVANSDHRKKLFEVAKS---KFGG 566
+GA V ++ R E+ + +K + D + I + + +++ A+S K
Sbjct: 63 ARKGAKVYLAGRNEEKYQKVMKQIH-DEVRHSKIRFLRLDLLDFESVYQAAESFIAKEEK 121
Query: 567 LDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLAKEAYPEL------IKRGGGN 728
L ILV+NA + ++P E + ++ + N S +L + P L + G
Sbjct: 122 LHILVNNAGI---MNPPFELTKDGYELQIQTNYLSHYLFTELLLPTLRRTAEECRPGDVR 178
Query: 729 IVFISSMAAYQ 761
IV ++S+A Q
Sbjct: 179 IVHVASIAYLQ 189
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 48.4 bits (110), Expect = 1e-06
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
Frame = +3
Query: 327 LKGKVAIVTASTEGIGYAIAKRLGHEGASVV-ISSRKEDNVENAVKSLRSDGITVEGIVC 503
++G+V ++T + GIG + K G V I V++A +L++D
Sbjct: 3 VEGRVVLITGAAGGIGKVLCKMFTELGDRVAGIDIVDPSKVQDAALALQAD--------- 53
Query: 504 HVANSDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLL 683
V+ +D + E G +D+L++NA + +P + + WD + ++ ++L
Sbjct: 54 -VSKADQIETAIEKVIQTLGPIDVLINNAGLADD-TPFEQLSHESWDHDVSLVLRGNYLT 111
Query: 684 AKEAYPELIKRG-GGNIVFISSM 749
+ P + K+G GG+IV I S+
Sbjct: 112 QRYVIPHMAKQGKGGSIVNIGSV 134
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 45.6 bits (103), Expect = 8e-06
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Frame = +3
Query: 345 IVTASTEGIGYAIAKRLGHEGASVVISSRKEDNV---ENAVKSLRSDGITVEGIVCHVAN 515
++T S++G+GYA+ K +G +V+ SR D + + + L+ D V+ +
Sbjct: 9 LITGSSKGLGYALVKVGLAQGYNVIACSRAPDTITIEHSKLLKLKLDVTDVKSV------ 62
Query: 516 SDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSSWLLAKEA 695
+ F+ AK +FG +DI+++NA V + + + +N + KEA
Sbjct: 63 ----ETAFKDAKRRFGNVDIVINNAGYG-LVGEFESYNIEEMHRQMNVNFWGVAYITKEA 117
Query: 696 YPELIKRG-GGNIVFISSMAAY 758
+ + G GG I+ ISS+A Y
Sbjct: 118 LNLMRESGKGGRILQISSVAGY 139
>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 38.3 bits (85), Expect = 0.001
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Frame = +3
Query: 330 KGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHV 509
KG A+VT +T+GIG A +L G +VV+ SR ++ ++ K L TV +
Sbjct: 56 KGYWAVVTGATDGIGKEYATQLAMSGFNVVLISRTQEKLDALAKELE----TVAKVKTRT 111
Query: 510 ANSDHRK---KLFEVAKSKFGG--LDILVSNAAVNPTV-SPILETDEQVWDKIFEIN 662
D+ K + FE G + +L++N + + + ET + D I IN
Sbjct: 112 IAIDYTKTTAETFEKLHQDLVGTPITVLINNVGQSHYMPTSFAETTVKEMDDIMHIN 168
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 34.3 bits (75), Expect = 0.019
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +3
Query: 345 IVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGI 482
+VT ++G+G AIAK L GA+V I +R ++ AV L I
Sbjct: 26 LVTGGSQGLGKAIAKELVLRGANVTIVARTVTKLQEAVAELSDSKI 71
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 33.1 bits (72), Expect = 0.044
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 324 RLKGKVAIVTASTEGIGYAIAKRLGHEGASVVISSRKE 437
++ G V +VT + GIG + ++L GA VVI R E
Sbjct: 72 KMNGMVVMVTGGSSGIGQVVVEKLASLGAQVVILLRTE 109
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 31.1 bits (67), Expect = 0.18
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 501 CHVANSDHRKKLFEVAKSKFGGLDILVSN 587
CH +N RK+L + +K FGG+ + V N
Sbjct: 34 CHYSNRARRKRLVQRSKETFGGITLPVKN 62
>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +3
Query: 387 KRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVANSDHRKKLFEVAKSKFGG 566
KRL E A + + S K +N+E+ ++RS + G + +H K L+E +K
Sbjct: 215 KRLQLEMAKLDVESAKPENLEHCKSAVRSAEDELNGAI------EHAKILYEQILNKDYN 268
Query: 567 LDILVS 584
D+L S
Sbjct: 269 TDLLRS 274
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +3
Query: 351 TASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLR 470
T + EG+ ++ + L G V+++S + N+EN ++ L+
Sbjct: 14 TGTAEGLAESLFRSLTRMGYDVLVNSMDDFNLENLLRPLQ 53
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 26.6 bits (56), Expect = 3.9
Identities = 27/96 (28%), Positives = 39/96 (40%)
Frame = +3
Query: 387 KRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVANSDHRKKLFEVAKSKFGG 566
KRL + + KED +L V G + +V N HR+ +S+
Sbjct: 176 KRLEKVANKIRVDWEKEDAAVLLGIALTGWSEQVPGRL-YVCNYCHRRLGVWNLQSEGQD 234
Query: 567 LDILVSNAAVNPTVSPILETDEQVWDKIFEINVKSS 674
D+L + P V P TD W +IFE+ K S
Sbjct: 235 FDVLEEHKKSCPWVIPQPFTDLLGWQQIFELLCKES 270
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/52 (23%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = +3
Query: 552 SKFGGLDILVSNAAVNPTVSPILETDEQVWDKIF---EINVKSSWLLAKEAY 698
S+FG + ++ + ++NP+ S ++ T E + ++ EI + +W++ E +
Sbjct: 190 SEFGDVGLMTGDVSINPSASCLIMTTEILRAMLYKNSEIMHEIAWVIFDEVH 241
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 405 GASVVISSRKEDNVENAVKSLRSDGITVEGI--VCHVANSDHRKKLFEVAKSKFGGLDIL 578
G +V ISS +D + SL + + I +C+V N D RK L + S+ G ++ L
Sbjct: 129 GVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNIEEL 188
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 405 GASVVISSRKEDNVENAVKSLRSDGITVEGI--VCHVANSDHRKKLFEVAKSKFGGLDIL 578
G +V ISS +D + SL + + I +C+V N D RK L + S+ G ++ L
Sbjct: 129 GVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNIEEL 188
>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 658 ISNILSHTCSSVSKIGETVGLTAAFDTRISKPPNLLLATSNN 533
+ +IL+H S + +V A ++ PP L +ATS N
Sbjct: 370 LKDILNHYSKSYNLQNPSVSTAAGTPLYLASPPALQVATSKN 411
>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -3
Query: 525 YDLNLQHDKLFLLL*YHRCVSF*LRFQHYLLFYCL*RLKRLHDP 394
Y+ NL +LF L CV Q Y FYCL R + P
Sbjct: 107 YETNLGKPELFWLDYLATCVRVPYACQGYSSFYCLSIFDRYYKP 150
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 585 NAAVNPTVSPILETDEQVWDKIFEINVKS-SWLLAKEAYPELIKRGGGNIVFIS 743
N AVN PILET E VW + + + A+ Y +L++ V+IS
Sbjct: 492 NLAVN---QPILETPELVWKAYIDFEFEEMEYGKARSIYQQLLRTAPHVKVWIS 542
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,817
Number of Sequences: 5004
Number of extensions: 61906
Number of successful extensions: 187
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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