Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3h17
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    67   1e-13
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   1.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.1  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 67.3 bits (157), Expect = 1e-13
 Identities = 39/137 (28%), Positives = 75/137 (54%), Gaps = 1/137 (0%)
 Frame = +3

Query: 336 KVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVAN 515
           +VA+VT +  GIG  + + L  +G  V+  + + D ++  V+ L+S    +  + C ++N
Sbjct: 8   EVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDLSN 67

Query: 516 SDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQV-WDKIFEINVKSSWLLAKE 692
            +   K+ E  +   G +DIL++NA +N  V+  L+ DE + W KIF+IN+     + +E
Sbjct: 68  QNDILKVIEWVEKNLGAIDILINNATINIDVT--LQNDEVLDWKKIFDINLLGLTCMIQE 125

Query: 693 AYPELIKRGGGNIVFIS 743
               + K+G  N + ++
Sbjct: 126 VLKLMKKKGINNGIIVN 142


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +3

Query: 501 CHVANSDHRKKL-FEVAKSK 557
           C V NS H+KKL F +AK +
Sbjct: 349 CSVTNSPHQKKLRFHLAKER 368


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
 Frame = +3

Query: 192 KVEKFKHISTHGSLRMMFRLKFIRSLMNTKMSKTPN-FVRANHNDRLKGKVAIVTASTEG 368
           K+   KH     S++   +LK  R     K+S  PN   + N +  +K      + S EG
Sbjct: 653 KLMMLKHREFRSSIKASDKLKDSRIKTTEKLSTDPNTHFQVNQSHGIKRS---GSHSWEG 709

Query: 369 IGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITV 488
             + ++K    E +    + +   NV   V S+  D  TV
Sbjct: 710 DSFKVSKH--EEVSRTSTAGQFPTNVATTVTSMSIDQSTV 747


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 567 LDILVSNAAVNPTV---SPILETDEQVWDKIFEINVKS 671
           +D++V++    P V   SP  E   Q+W +I + ++ S
Sbjct: 263 VDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNS 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,912
Number of Sequences: 438
Number of extensions: 4555
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)