Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3h15
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 29 0.51
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 28 1.2
SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|... 28 1.2
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 28 1.6
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 26 4.8
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 26 4.8
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom... 26 6.3
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 26 6.3
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 25 8.4
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 25 8.4
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 29.5 bits (63), Expect = 0.51
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 245 CPDNAFCRLNSYCVCKEGYV 304
CP NA C +Y CK GYV
Sbjct: 371 CPPNAICPSPNYVECKPGYV 390
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 37 GRIANSPAVFTDRRERPLPDAVSRASPEIYNRK*RNGRMAADFRGPPGPGDSTRPRETT 213
GR++NSP + E L +++ A + NR R R PPG D + T+
Sbjct: 192 GRLSNSPVKSPNMPESGLAKSLAAARNPLLNRPTSFNRQTRIRRAPPGKLDLSNSNPTS 250
>SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 177
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -2
Query: 458 RLDELLEHTRSYLRYIQSEHPLSCDT-EC--FGHTP 360
++ E + Y+R ++S P+SCDT C F H P
Sbjct: 140 QIQRFQEESTLYIRALKSSEPVSCDTVRCIHFNHIP 175
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 245 CPDNAFCRLNSYCVCKEG 298
CP+NA C N CKEG
Sbjct: 531 CPENAECGFNRQLFCKEG 548
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 337 PQRGPQRGGVCPKHSVSHDNG 399
PQR P+ G V KH V D+G
Sbjct: 822 PQRDPETGEVVWKHGVVEDDG 842
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 26.2 bits (55), Expect = 4.8
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Frame = +1
Query: 40 RIANSPAVFTDRRER--PLPDAVSRASPEIYNRK*RNGRMAADFRGP---PGPGDSTRPR 204
R ++P T R R P P A + S + + RNG AA G G G S R
Sbjct: 148 RTTSTPTTTTARTTRTTPRPTATTNTSNQSTSNSTRNGTSAATSNGTGTGAGTGASHRSS 207
Query: 205 ETTDR 219
T+R
Sbjct: 208 PVTNR 212
>SPCC306.06c |||ER membrane protein, BIG1 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 153 HPPISSLPVINFGAGTAHRVWQRSLAPVSENGRT 52
H ++SLP N G+ T + Q PV++NG T
Sbjct: 226 HGQLASLPDQNEGSQTTLAMHQTRKHPVTDNGAT 259
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 500 HIFHQLMQSRNIVPRLDELLEHTRSYLRYIQSEHPLSCDTEC 375
H+ H L Q +++ RSYL +I S L C T C
Sbjct: 199 HLIHSLRQLLAF-SEINDFPSEIRSYLEFILSNLDLECLTLC 239
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 673 RSGALQLILAFFAKSCVSNASCSIVPRAELQLTCTVTSYAECLSF 539
++G L + A FA V CS+V ++ LQ+ T+T LSF
Sbjct: 108 KNGMLVYVNAIFA---VVGIYCSVVHKSILQIGVTLTFICPMLSF 149
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 125 ITGSDEMGGWQLIF-VALLGLATAQGPEKRRTGNVCNVDMD 244
IT + G +F + +GLA QG K+R G + +D++
Sbjct: 190 ITADIKEGDSVAVFGLGSVGLAVIQGAVKKRAGRIFGIDVN 230
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,245
Number of Sequences: 5004
Number of extensions: 69546
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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