Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3h15
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0349 + 22457820-22457987,22458202-22458246,22458597-224586... 33 0.18
08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195 33 0.31
08_01_0843 - 8276619-8278991 32 0.41
03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775 32 0.41
11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447... 31 0.71
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146... 30 1.6
11_01_0196 - 1547373-1549859 30 1.6
06_03_0548 + 22004338-22006746 30 1.6
04_01_0377 - 4970034-4970687 30 1.6
06_03_1333 - 29410014-29410052,29410071-29410322,29410601-294106... 30 2.2
03_05_0232 + 22174516-22174768,22175278-22175471,22175557-221756... 30 2.2
06_02_0254 - 13517352-13517557,13517612-13519073 29 3.8
11_01_0194 + 1539847-1541533,1541650-1541730,1541773-1542335 29 5.0
04_04_0136 - 23034715-23034794,23034930-23035104 29 5.0
03_06_0547 - 34656862-34657217,34657444-34657540 29 5.0
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 28 6.6
06_03_1036 + 27053480-27053729,27054616-27054704,27054881-270549... 28 6.6
04_04_0176 - 23329589-23331043 28 6.6
01_05_0011 + 17133501-17133738,17135335-17135607,17145224-171453... 28 6.6
12_01_0198 - 1461305-1463812 28 8.7
10_01_0293 + 3039945-3040857,3042457-3042630,3043562-3044556 28 8.7
07_03_1176 + 24567720-24570932 28 8.7
05_05_0165 + 22851863-22852566,22852811-22852964,22853112-228532... 28 8.7
03_05_0532 - 25322822-25322932,25323018-25323050,25323187-253232... 28 8.7
>09_06_0349 +
22457820-22457987,22458202-22458246,22458597-22458650,
22458742-22458846,22458932-22459138,22459217-22459302,
22459423-22460330,22460566-22460624
Length = 543
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 286 DAVTVQSAESVIRTVHVDVANVTGPSFLGALCCRQAQEGH 167
D +T+ A++++ VD+ VTGPS L AL + G+
Sbjct: 70 DKLTLDQAKTILSLADVDIEGVTGPSILAALSTWMCKPGY 109
>08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195
Length = 837
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +2
Query: 227 CNVDMDCPDNAFCRLNSY----CVCKEGYVYAAINSTNKGCLKEARNG 358
C V C N+FC++ + C C G+ +++ N T +GC + G
Sbjct: 294 CGVKGVCGPNSFCQVTASGETSCSCLPGFEFSSANQTTQGCWRVRTGG 341
>08_01_0843 - 8276619-8278991
Length = 790
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +2
Query: 227 CNVDMDCPDNAFCRLNSY----CVCKEGYVYAAINSTNKGCLKEARNG 358
C+V C N+FC++ S C C G+ + + N + +GC + G
Sbjct: 294 CSVKGVCGPNSFCQVTSSGETSCSCLPGFEFLSANQSTQGCWRAQTGG 341
>03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775
Length = 1441
Score = 32.3 bits (70), Expect = 0.41
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +2
Query: 227 CNVDMDCPDNAFCRLN----SYCVCKEGYVYAAINSTNKGCLKEARNGEACVQN 376
C V C N+FC L + C C G+ + + N + GC + G CV+N
Sbjct: 940 CLVKGVCGPNSFCHLTVTGETSCSCLPGFEFLSTNQSTLGCWRALPTG-GCVRN 992
>11_08_0023 +
27741775-27742475,27744163-27744413,27744557-27744715,
27744976-27745409,27745537-27746076
Length = 694
Score = 31.5 bits (68), Expect = 0.71
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = +2
Query: 212 RTGNVCNVDMDCPDNAFCRLNSYCVCKEGYVYAAINSTNKGC--LKEARNGEACVQNIQC 385
R+ +VC D NA C C EGY N GC + E + + C +C
Sbjct: 275 RSCSVCVSDQSDCANATNGDGYLCKCSEGYDGNPYLKGNGGCTDIDECKEPDRCSTGSRC 334
Query: 386 HMTMGVH 406
H T G +
Sbjct: 335 HNTEGYY 341
>12_01_0199 -
1467137-1467172,1467302-1467391,1468304-1468396,
1468488-1469515,1470005-1470552,1470656-1470695,
1473774-1475196
Length = 1085
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Frame = +2
Query: 221 NVCNVDMDCPDNAFCRLNS--YCVCKEGYVYAAINSTNKGCLKEARNGEACVQNIQCHMT 394
N C + C NA C + CVC GY A + ++GC +G+ + +
Sbjct: 296 NPCIIHGVCGANAVCLYSPAPVCVCAPGYARADPSDWSRGCRPTFNSGDGGGRPRAMKLV 355
Query: 395 MGVHSECTGGSCACAPTAHLDGERCYETALIGERCVVDQ 511
H++ G + LD C + CVV Q
Sbjct: 356 ALPHTDFWGFDINSSENLSLD--ECSTRCMSEPSCVVFQ 392
>11_01_0196 - 1547373-1549859
Length = 828
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 218 GNVCNVDMDCPDNAFCRLN--SYCVCKEGYVYAAINSTNKGC 337
GN CN+ C NA C + CVC G+ + ++GC
Sbjct: 291 GNPCNIHGVCGANAVCLYSPAPVCVCAPGHERVDASDWSRGC 332
>06_03_0548 + 22004338-22006746
Length = 802
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 224 VCNVDMDCPDNAFC--RLNSYCVCKEGYVYAAINSTNKGC 337
+CNV C N C R CVC GY ++ + +KGC
Sbjct: 282 LCNVRGVCGINGICVYRPAPTCVCAPGYQFSDPSDWSKGC 321
>04_01_0377 - 4970034-4970687
Length = 217
Score = 30.3 bits (65), Expect = 1.6
Identities = 47/172 (27%), Positives = 60/172 (34%), Gaps = 8/172 (4%)
Frame = +2
Query: 185 ATAQGPEKRRTGNVCNVDMDCPDNAFCRLNSYCVCKEGYVYAAINSTNKGCLKEAR---- 352
A A +T N M CP N C YC G Y + C R
Sbjct: 10 AAAVAATNAQTCGKQNDGMICPHNLCCSQFGYCGL--GRDYCGTGCQSGACCSSQRCGSQ 67
Query: 353 NGEACVQNIQC---HMTMGVHSECTGGSCACAPTAHLDGERCYETALIGERCVVDQNC-Y 520
G A N QC + G SE G C P D +C A GE C + C
Sbjct: 68 GGGATCSNNQCCSQYGYCGFGSEYCGSGCQNGP-CRAD-IKCGRNA-NGELCPNNMCCSQ 124
Query: 521 LGEQGIERQAFCVRGYCTCQLQFSPRDNGTRCVRDAALGEECEDQLQCAGPG 676
G G+ + FC G CQ + RC + A G++C + C+ G
Sbjct: 125 WGYCGLGSE-FCGNG---CQSGACCPEK--RCGKQAG-GDKCPNNFCCSAGG 169
>06_03_1333 - 29410014-29410052,29410071-29410322,29410601-29410633,
29411035-29411045,29411420-29415325,29415437-29415920
Length = 1574
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 276 LFSLQKALSGQSMSTLQTLPVRRFSGPCAVARPRRATKISCHPPISSLPVIN 121
+FSL + L + L LP FS P +RP + T ++ P + L ++N
Sbjct: 959 VFSLLEVLIVRDCPELMELP---FSHPTTCSRPEQGTNLTQFPTLKKLEIVN 1007
>03_05_0232 +
22174516-22174768,22175278-22175471,22175557-22175604,
22176707-22176784,22178073-22178145,22178406-22178577,
22179652-22180083,22180209-22180400,22180696-22180771
Length = 505
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +3
Query: 90 ARRGEPCQ---PRNL*PEVTKWEDGS*FSW 170
AR+G+ C P++L P++ KW+DG W
Sbjct: 33 ARKGKECHLRIPKSLPPKLFKWQDGKNLRW 62
>06_02_0254 - 13517352-13517557,13517612-13519073
Length = 555
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 590 SPRDNGTRCVRDAALGEECEDQLQCAGPGLECRGTCRCRDNWVA 721
+PR RD L EECED ++CRGT RC D+ A
Sbjct: 308 APRSGFPDDFRDVLL-EECEDAGSDRCRAVDCRGT-RCNDDGAA 349
>11_01_0194 + 1539847-1541533,1541650-1541730,1541773-1542335
Length = 776
Score = 28.7 bits (61), Expect = 5.0
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 2/99 (2%)
Frame = +2
Query: 221 NVCNVDMDCPDNAFCRLNS--YCVCKEGYVYAAINSTNKGCLKEARNGEACVQNIQCHMT 394
N C + C NA C + CVC GY A + ++GC + + Q M
Sbjct: 304 NPCIIHGVCGANAVCLYSPAPVCVCAPGYGRAEPSDWSRGCRPTFNSSDDGGQPRAMKMV 363
Query: 395 MGVHSECTGGSCACAPTAHLDGERCYETALIGERCVVDQ 511
H++ G + LD C + CVV Q
Sbjct: 364 PLPHTDFWGFDINSSENLSLD--ECSTRCMSEPSCVVFQ 400
>04_04_0136 - 23034715-23034794,23034930-23035104
Length = 84
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 275 CSVCRKRYPDSPCRRCKRYRSVVSRGLVLSPG 180
C C + PC C+ YR + SRG +S G
Sbjct: 28 CGDCCVHWCCGPCALCQEYRELKSRGFDMSLG 59
>03_06_0547 - 34656862-34657217,34657444-34657540
Length = 150
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 281 SNCSVCRKRYPDSPCRRCKRYRSVVSRG 198
+ C+ C + PC C+ YR +V+RG
Sbjct: 95 AGCADCCVHFCCEPCALCQEYRELVARG 122
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -3
Query: 661 LQLILAFFAKSCVSNASCSIVPRAELQLTCTVT 563
L+ I + AK ++N++ S+VP L+L CTV+
Sbjct: 1910 LEEIASTLAKFRIANSTFSLVPSIALKLPCTVS 1942
>06_03_1036 +
27053480-27053729,27054616-27054704,27054881-27054950,
27055145-27055228,27055332-27055408,27055519-27055583,
27055723-27055765,27055889-27055952,27056126-27056254,
27056522-27056625,27056724-27056828
Length = 359
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = +2
Query: 638 EECEDQLQCAGPGLECRGT-----CRCRDNWV 718
+EC+++L C P C+ T C+C+ N +
Sbjct: 250 DECKEKLACTCPNCHCKNTWGNYECKCKGNQI 281
>04_04_0176 - 23329589-23331043
Length = 484
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 31 APGRIANSPAVFTDRRERPLPDAVSRASPE 120
+PG A SP+ R PLPD ++A PE
Sbjct: 66 SPGHSALSPSPPPPPRRGPLPDPTAKAEPE 95
>01_05_0011 +
17133501-17133738,17135335-17135607,17145224-17145348,
17145463-17145612,17145653-17145696,17145822-17146174,
17146280-17146602,17147010-17147105
Length = 533
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 144 ISSLPVINFGAGTAHRVWQRSLAPVSENGRTIGN 43
ISS I G+GT + W RS AP ++ G+
Sbjct: 228 ISSAHAIAGGSGTKRKPWARSSAPAGSRQKSAGS 261
>12_01_0198 - 1461305-1463812
Length = 835
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +2
Query: 221 NVCNVDMDCPDNAFCRLNS--YCVCKEGYVYAAINSTNKGC 337
N C + C NA C + CVC GY A + +GC
Sbjct: 297 NPCVIHGVCGANAVCLYSPAPVCVCVPGYARADASDWTRGC 337
>10_01_0293 + 3039945-3040857,3042457-3042630,3043562-3044556
Length = 693
Score = 27.9 bits (59), Expect = 8.7
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = +2
Query: 203 EKRRTGNVCNVDMDCPDNAFCRLNSYCVCKEGYVYAAINSTNKGCLKEARNGEACVQNIQ 382
EK+ G C D N+ YC CK+GY ++GC K+ E V N +
Sbjct: 259 EKKPAGYACMSDNSECVNSTNGPGYYCKCKQGYDGNPYVDKDQGC-KDI--NECDVSNKK 315
Query: 383 CHMTMGVHSECTGG-SCACAPTAHLDGE 463
+ GV + G C C GE
Sbjct: 316 KYPCYGVCNNIPGDYECHCRVGYQWSGE 343
>07_03_1176 + 24567720-24570932
Length = 1070
Score = 27.9 bits (59), Expect = 8.7
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 2/120 (1%)
Frame = -3
Query: 472 VTSFPV*MSCWSTRAATSGTFRVNTHCHVTLNVLDTRLPVAGLFEASFVSAVDSCIHVPF 293
V + P W+ RA G N +L +++ LF + + C H+ F
Sbjct: 309 VVALPKLRVLWAPRATLEGELPRNWSACQSLEMINLG---ENLFSGGIPNGLVECSHLKF 365
Query: 292 L--ADAVTVQSAESVIRTVHVDVANVTGPSFLGALCCRQAQEGHENQLPSSHFVTSGYKF 119
L + + + + +DV +V+G F GA+ + + +QLP V+ F
Sbjct: 366 LNLSSNKLTGAIDPSLTVPCMDVFDVSGNRFSGAMPVFEQKGCPSSQLPFDDLVSEYSSF 425
>05_05_0165 +
22851863-22852566,22852811-22852964,22853112-22853261,
22853769-22853930,22854070-22854242,22854330-22854396,
22854556-22854722,22855216-22855374,22856187-22856276,
22856392-22856483,22856587-22856681,22857328-22857405,
22858364-22858459,22859132-22859206,22859290-22859381,
22859462-22859624,22859734-22859794,22860016-22860116,
22860567-22860614
Length = 908
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -2
Query: 305 TRTLPCRRSNCSVCRKRYPD--SP-CRRCKRYRSVVSRGLVLSPGPGGPRKSAAI 150
+RTLP +C R P SP CRR +R V+S SP P +S ++
Sbjct: 3 SRTLPPPHLRLDLCSPRLPPLRSPGCRRRRRRGRVLSALSSPSPSPSSASRSQSV 57
>03_05_0532 -
25322822-25322932,25323018-25323050,25323187-25323222,
25323301-25323336,25323431-25323479,25323671-25323762,
25323899-25323984,25324098-25324261,25325573-25325601,
25325697-25325807,25326471-25326512,25326597-25326647,
25326848-25326898,25327325-25327382,25327823-25327908,
25328008-25328056,25328155-25328273,25328504-25328590,
25328726-25328787,25329222-25329290,25329884-25330133
Length = 556
Score = 27.9 bits (59), Expect = 8.7
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = -2
Query: 587 TAIDMYSNLVRRMLVFRCLARRGSSSDRPHIFHQLMQSRNIVPRLDELLEHTRSYLRYIQ 408
T + YS + R + F + S+ +P M S +V RL ++ TRSYLR+
Sbjct: 335 TGLKAYSRIFSR-IAFGARRNKIMSNSQPAQEDDCMSSI-LVSRLIRAMQPTRSYLRWSD 392
Query: 407 SEHPLSCDTECFGHTPPRCGP 345
H + + + P P
Sbjct: 393 DLHKMFVEAVAYHGGPYEAKP 413
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,563,608
Number of Sequences: 37544
Number of extensions: 577106
Number of successful extensions: 1864
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1862
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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