Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3h13
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 33 0.042
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 33 0.055
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 33 0.055
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 29 0.51
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.2
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 28 1.2
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.2
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.1
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 27 2.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.1
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 27 2.7
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 4.8
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 26 4.8
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 33.1 bits (72), Expect = 0.042
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +1
Query: 460 LVSTSEEMDVISMSFILPSAQCDL----DLTTQTKGWLNSIIFIGMMVGAYAWGSVADSL 627
L+STS +M V P Q + L++Q S+ +G+ +G G ++D L
Sbjct: 85 LLSTSLQMYVFWTPNFYPGVQDSVMELWHLSSQVSLLGQSMFVLGVALGPLFLGPLSDLL 144
Query: 628 GRKRVLIAISIVNALAIVASSFSQNY 705
GRK V I I+ ++ + ++NY
Sbjct: 145 GRKLVYIGSLIIYVCFCISCALARNY 170
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 32.7 bits (71), Expect = 0.055
Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 12/144 (8%)
Frame = +1
Query: 313 TAELGVVPSVKKSKSDPEK----GSNSEKADFERAIELTGYGRF-----HYMLLAVCGLV 465
+ E + SV + +SD EK S + + E ++ G R H++ +AV G+
Sbjct: 26 SVEEPIEASVTRYRSDEEKLDDKSSGAHVTEKEAEFDIEGGSRETSQWKHFLNVAVAGVA 85
Query: 466 STSEEMDVISMSFILPSAQ-CDLDLTTQTKGW--LNSIIFIGMMVGAYAWGSVADSLGRK 636
S+ S+ ++ + + TT K + I ++G +VG ++G +D GRK
Sbjct: 86 LMSDGYCSNSIGTVITILRKLYPEETTHNKSLQDIGMIAYVGTIVGQLSFGWYSDRFGRK 145
Query: 637 RVLIAISIVNALAIVASSFSQNYE 708
+I +I+ ++ + + Y+
Sbjct: 146 NGMITATIILIVSTALCTGAYGYK 169
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 32.7 bits (71), Expect = 0.055
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Frame = +1
Query: 403 AIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKG---WLNSII 573
A+ G+GR+ + L V G S+ + + S IL +G +L
Sbjct: 68 AMNEIGFGRYQWYLFFVAGFGWMSDNIWPVCTSLILMRLDEVDGPHPPAEGRAPYLTLSQ 127
Query: 574 FIGMMVGAYAWGSVADSLGRKRVLIAISIVNALAIVASSFSQNYELFMFF 723
+G++VGA W AD++GR+ + + V + S N+ F
Sbjct: 128 NLGLLVGAMVWSLSADTIGRRWAFNLTFLFTGVFAVIAGASPNFASICVF 177
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 29.5 bits (63), Expect = 0.51
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 565 SIIFIGMMVGAYAWGSVADSLGRKRVLIAISIVNALAIVASSFSQNYELFMFFRF 729
++ IG+M+G + +++ GR+ + I + AL + ++ S N +F+ FRF
Sbjct: 82 TLYVIGVMLGPLIFSPLSELYGRRPLNIFGYTLFALMQIPTALSVNLAMFVVFRF 136
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +1
Query: 577 IGMMVGAYAWGSVADSLGRKRVLIAISIVNALAIVASSFSQNYELFMFFRF 729
+G++ G + +++ GR+ + + V AL + + S N +F+ FRF
Sbjct: 89 LGILFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRF 139
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +1
Query: 577 IGMMVGAYAWGSVADSLGRKRVLIAISIVNALAIVASSFSQNYELFMFFRF 729
+G++ G + +++ GR+ + + V AL + + S N +F+ FRF
Sbjct: 89 LGILFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRF 139
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +1
Query: 577 IGMMVGAYAWGSVADSLGRKRVLIAISIVNALAIVASSFSQNYELFMFFRF 729
+G++ G + +++ GR+ + + V AL + + S N +F+ FRF
Sbjct: 89 LGILFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRF 139
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 395 KSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL 264
KS S + SG+D F + ++ ++++L GP SP S L
Sbjct: 129 KSVSSYVSNSSGADRSFSSNSSSDTNSILYAGPTFTHSPAASNL 172
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 27.5 bits (58), Expect = 2.1
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +1
Query: 286 LQLNGPGSKTAELGVVPSVKKSKSDPEKGSNSEKADFERAIELTGYGRFHYMLLAVCGLV 465
L +N G +P++ S S +++ R + +T + R Y+ + + ++
Sbjct: 1302 LDVNNQRHTLISAGRIPNLDFSDSVTSMEASTFHDGSIRLVVVTKWSRIVYLDVGMMRVL 1361
Query: 466 STSE-EMDVISMSFILPSAQCDLDLTTQTKGWL 561
S+ + + S + ++ S C+ L TKGWL
Sbjct: 1362 SSDQLPLQCGSATSVVVSEGCNWALIGTTKGWL 1394
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 8 LRECLQHRLLVLSSPHLTRTVHSHLKWRNAH 100
LR L+H LL S L + + S LKWRN H
Sbjct: 365 LRCALRHELL---SAGLQKAIDSLLKWRNRH 392
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 84 SGGTLTNNKEEAHQIVTGKLYAVGSATPPSERRLSVPA-TTIQS 212
+GGT+TN E Q +T L A S T P + +P +TI S
Sbjct: 324 TGGTVTNTVYEGSQTITSTL-ATASGTVPGTVEVILPGPSTIYS 366
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 268 CDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKG-SNSEKADFERAIELT 417
CD L+ GSK+ K++ P K +N+E D +RAIEL+
Sbjct: 222 CDSCYSLRTKPKGSKSRARNERKFHAKTRKTPSKPVTNNEDEDIKRAIELS 272
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -1
Query: 277 LHHNCEDSWAPGQFLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLPV 131
LH + ED+ + G FL S A R+C + + + + L + + P+
Sbjct: 125 LHASLEDASSVGLFLLSLASERVCFSESANSQEIESIDLGLGSQFGYPI 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,048
Number of Sequences: 5004
Number of extensions: 66494
Number of successful extensions: 188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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