Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3h09
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    28   1.2  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    27   2.8  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   6.4  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    26   6.4  

>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 15  LFDPHIL--HHVQFCSEDRIKVIVGTTPFCSQ 104
           LF  HI    H+ +C  ++I V +GTTP  +Q
Sbjct: 185 LFGKHIRLEEHINYCKANKIGVGIGTTPRIAQ 216


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 649 NNISLTNSFKLWPAEKTLPFADIIIALNDMSSL 551
           NNI     F ++P  +TLPF+  ++ + D   L
Sbjct: 78  NNIYRARKFAIFPITRTLPFSTGLLNIKDEEEL 110


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 356 FNNTFNNLH---IMYFIINTYNFFMLICLTYFY*SVNNVLLLDKFLFII 493
           F+  F+ L+   +  F   T NF M++C  +F+    N ++ +  LF I
Sbjct: 642 FHKDFSKLYKEILDIFNSTTVNFLMILCSRFFHRLAVNKVVQEDILFAI 690


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 528 LIEAINKNKEDISLRAIIISAKGNVFSAGHNLKEL 632
           L + +++ +ED SL  I  S K NVFS   N+ ++
Sbjct: 40  LPDRVHERREDWSLFFIHFSKKSNVFSLFSNVDDI 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,047
Number of Sequences: 5004
Number of extensions: 45887
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)