Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3h09
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.2  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       22   6.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.8  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   9.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   9.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.0  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 1   DFYLTYSIHIFYI--MFSFVQKTGSRSLSVLRRFVHNEYITTT 123
           DF L +    F+     +F ++TG  +LSV   F+ N ++  T
Sbjct: 56  DFTLDFYFRQFWTDPRLAFKKRTGVETLSVGSEFIKNIWVPDT 98


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 1   DFYLTYSIHIFYI--MFSFVQKTGSRSLSVLRRFVHNEYITTT 123
           DF L +    F+     +F ++TG  +LSV   F+ N ++  T
Sbjct: 56  DFTLDFYFRQFWTDPRLAFKKRTGVETLSVGSEFIKNIWVPDT 98


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +1

Query: 394 HYQYLQLFYV---NLSDLLLLKCQQCTFI 471
           H+  L  FY    +L ++LL   Q+CTFI
Sbjct: 96  HFTALGNFYFVHESLKNVLLWDFQECTFI 124


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 386 MYFIINTYNFFMLICLTYFY 445
           M F++N    FM++ ++Y Y
Sbjct: 1   MKFLVNVALVFMVVYISYIY 20


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 46  SFVQKTGSRSLSVLRRFVHNEYITTT 123
           +F ++TG  +LSV   F+ N ++  T
Sbjct: 12  AFKKRTGVETLSVGSEFIKNIWVPDT 37


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 338 SYSICVFNNTFNNLHIMYFIIN 403
           +Y+   +NN +N+  + Y IIN
Sbjct: 308 NYNYKNYNNNYNSKKLYYNIIN 329


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 338 SYSICVFNNTFNNLHIMYFIIN 403
           +Y+   +NN +N+  + Y IIN
Sbjct: 319 NYNYKNYNNNYNSKKLYYNIIN 340


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 332 LFSYSICVFNNTFNNLHIMYFI 397
           +F   I      FN LHI+Y +
Sbjct: 1   MFKMQILTLGVLFNTLHIIYSV 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,493
Number of Sequences: 438
Number of extensions: 3283
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)