Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3h08
         (221 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    24   3.1  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    23   5.5  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    23   5.5  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    23   7.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    23   7.2  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    23   7.2  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    22   9.5  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    22   9.5  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    22   9.5  
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    22   9.5  

>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -1

Query: 68  PVSAVTVSTGFDS 30
           P SAVT+S GFDS
Sbjct: 317 PSSAVTLSNGFDS 329


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 14  KKLWLLNRNP*KLSLQKPEQL*LKSNLNKN 103
           K L LLNR+  KL  +  E L  K+N+N N
Sbjct: 633 KILRLLNRSSSKLQDRDQEYLISKNNVNGN 662


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 65  VSAVTVSTGFDSTTTISSV 9
           VSA TV+T F +  T+SS+
Sbjct: 598 VSATTVATTFSAYGTVSSI 616


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -1

Query: 218 FFYAASYIKNN-IHXXXXXXLQNYKTIK*YID 126
           FF  AS+  NN +H        +YK I  Y D
Sbjct: 280 FFEMASHFSNNKMHKERLQEFSSYKNIDDYYD 311


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 90   FDFNQSCSGFCSDSFY 43
            F   ++CSGFC++S +
Sbjct: 1431 FKAMRACSGFCNESLH 1446


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -1

Query: 53  TVSTGFDSTTTISSVTT 3
           T++TG+  +TT++S+ T
Sbjct: 713 TITTGWTGSTTLTSIVT 729



 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 86  TSIKVAPVSAVTVSTGFDSTTTISSVT 6
           T++       VTV+TG+  T T S+VT
Sbjct: 832 TTVTATETDIVTVTTGYTGTET-STVT 857



 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 86  TSIKVAPVSAVTVSTGFDSTTTISSVT 6
           T++       VTV+TG+  T T S+VT
Sbjct: 876 TTVTATETDIVTVTTGYTGTET-STVT 901



 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 86  TSIKVAPVSAVTVSTGFDSTTTISSVT 6
           T++       VTV+TG+  T T S+VT
Sbjct: 920 TTVTATETDIVTVTTGYTGTET-STVT 945



 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 86   TSIKVAPVSAVTVSTGFDSTTTISSVT 6
            T++       VTV+TG+  T T S+VT
Sbjct: 964  TTVTATETDIVTVTTGYTGTET-STVT 989



 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 86   TSIKVAPVSAVTVSTGFDSTTTISSVT 6
            T++       VTV+TG+  T T S+VT
Sbjct: 1008 TTVTATETDIVTVTTGYTGTET-STVT 1033



 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 86   TSIKVAPVSAVTVSTGFDSTTTISSVT 6
            T++       VTV+TG+  T T S+VT
Sbjct: 1052 TTVTATETDIVTVTTGYTGTET-STVT 1077



 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 86   TSIKVAPVSAVTVSTGFDSTTTISSVT 6
            T++       VTV+TG+  T T S+VT
Sbjct: 1096 TTVTATETDIVTVTTGYTGTET-STVT 1121


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 102 FLLRFDFNQSCSGFCSDSFYGFRFNNHNF 16
           F +R+ FNQ      SD   G    + NF
Sbjct: 370 FQIRYSFNQELLSTKSDGLLGRHLAHSNF 398


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 39  TRRNCHCRNRSNFD*SQISIKTMKM 113
           T R  HCRN      +Q S KT+ +
Sbjct: 186 TNRKHHCRNCGGVFCNQCSSKTLSL 210


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 136 YLIVL*FCKRSKIY 177
           +LIVL  CKR K Y
Sbjct: 399 FLIVLSLCKRPKFY 412


>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 128 DLKLLHFHSFY*DL-TSIKVAPVSAVTVSTGFDST 27
           D K + + S + D+ +SI+V+P+    VST  D T
Sbjct: 97  DNKRISYFSGHTDIVSSIEVSPIEDQFVSTANDKT 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 641,436
Number of Sequences: 5004
Number of extensions: 8476
Number of successful extensions: 25
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)