Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3h08
         (221 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81076-10|CAB03059.1|  394|Caenorhabditis elegans Hypothetical p...    33   0.027
Z71258-2|CAA95781.2|  668|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>Z81076-10|CAB03059.1|  394|Caenorhabditis elegans Hypothetical
           protein F35C5.9 protein.
          Length = 394

 Score = 33.1 bits (72), Expect = 0.027
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -1

Query: 155 NYKTIK*YIDLKLLHFHSFY*DLTS-IKVAPVSAVTVSTGFDSTTTIS 15
           NYK +      K  ++H++  DLT  +K   V+ +TV+TG DS TT S
Sbjct: 162 NYKKVVVLFTSKYNYYHTYPEDLTDYLKSTGVTIITVNTGGDSYTTQS 209


>Z71258-2|CAA95781.2|  668|Caenorhabditis elegans Hypothetical
           protein C01H6.2 protein.
          Length = 668

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 78  QSCSGFCSDSFYGFRFNNHNFFCNYF 1
           QS + FC   FYG R NN     +Y+
Sbjct: 469 QSFAVFCFSDFYGERENNKATIPDYY 494


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,485,007
Number of Sequences: 27780
Number of extensions: 46326
Number of successful extensions: 156
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 12,740,198
effective HSP length: 53
effective length of database: 11,267,858
effective search space used: 225357160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)