Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3h07
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||...    28   1.5  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   2.0  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    27   2.7  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   3.5  
SPCC1919.08c |mrpl33||mitochondrial ribosomal protein subunit Ym...    26   4.7  

>SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 197

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 595 PRPIPCLCFSPYRSQFGIFQGSS-ATYMSIFFSTI 494
           P+P+  LC +   S F  FQ SS   +M+ F  T+
Sbjct: 13  PKPVQLLCTASDLSSFSFFQRSSIGEFMNFFTKTV 47


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
 Frame = -1

Query: 679 NCSPRNDGSTTIVNTYNRFWLSYEYSN-----VPRPIPCLCFSPYRSQFGIFQGSSATYM 515
           NC+P +  S     +YN   ++YE  N     + R IP L   P   Q+ +  G++  + 
Sbjct: 598 NCTPNSIASIIQKKSYNVSSITYELLNEDACALSRTIPKLSILPTNGQYFLLTGATGYFG 657

Query: 514 SIFFSTII 491
             F   ++
Sbjct: 658 RRFLEYLV 665


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -1

Query: 511 IFFSTIIFMC---YVVGACFLSGLDFIITKNHFVDGEHRYDGYIVST 380
           I+F  +  MC    ++ + F    D + TK HF D +   DG + ST
Sbjct: 419 IYFIFLFVMCASQLIMTSIFGKETDRLSTKEHFTDDKSYIDGVMPST 465


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 164 KGFDWRAVVDFGLYNNLEKVEMEVYFEKEI 253
           KGF W A+  FG+++N   ++++ +FEK +
Sbjct: 438 KGF-WYAI-SFGVFSNCFSLQLQSFFEKHL 465


>SPCC1919.08c |mrpl33||mitochondrial ribosomal protein subunit
           YmL33|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 97

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +2

Query: 398 VVTMFSINKVILCNDEIKARQKTSSYDITHKYNGGKK 508
           +V++ ++ + +    E K+   +S + + H+YN G K
Sbjct: 53  LVSVSTVKQKLAAGQEKKSLASSSGFTVIHRYNNGLK 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,603
Number of Sequences: 5004
Number of extensions: 67397
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)