Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3h07
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042...    29   2.8  
06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687...    29   4.9  
06_03_1369 + 29620958-29621030,29622421-29622452,29622538-296225...    28   8.5  

>11_06_0061 -
           19702893-19703869,19703960-19704098,19704166-19704287,
           19704362-19704416,19704508-19704624,19704718-19705413,
           19706358-19706393,19707190-19708236
          Length = 1062

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = +2

Query: 551 LTSVRTEAKAGDWPWHVAILIRQPKSVVGVYNCGGTIISRRAVLTAGHCLF 703
           L   R +   G+W    A +  QPK  V VY  G  +  RR     GH  F
Sbjct: 179 LVRPRRDYVGGEWVPSEAAIALQPKQAVRVYQVGDKVEVRRDREVYGHSWF 229


>06_01_1193 +
           10264360-10264504,10264763-10264910,10268350-10268748,
           10268925-10271214
          Length = 993

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/79 (27%), Positives = 41/79 (51%)
 Frame = +2

Query: 248 EIKINKASQNTTFVVVRNNWHHIIIRPIGPLQERFTFDLNIRNSSGNDVPVVTMFSINKV 427
           E K++  SQN  + +V+    H+I   I  L+ R   +++ RNS  N V  ++  + + +
Sbjct: 144 EFKVHIESQNLFYQMVKLRKRHLIATQIRNLKSRVE-EVSSRNSRYNLVKPISSSNEDDM 202

Query: 428 ILCNDEIKARQKTSSYDIT 484
               ++I+  Q TS+ D T
Sbjct: 203 DCYAEDIR-NQSTSNVDET 220


>06_03_1369 +
           29620958-29621030,29622421-29622452,29622538-29622598,
           29622695-29622711,29622916-29623250,29623329-29623686,
           29623784-29624371,29624664-29624939
          Length = 579

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 125 NPCGLGIIYFDNVKGFDWRAVVDFGLYNNLEKVEMEVYFEKEIKINKASQNTTFVVVRN 301
           NP G   I+ +NV  F W       +   LE V M+ Y+ K  +    S  ++ +  RN
Sbjct: 318 NPPGDATIHVENVDDFKWLNSSYCPVLKQLESVAMKEYYFKADRPKTLSAGSSNLKYRN 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,638,521
Number of Sequences: 37544
Number of extensions: 380870
Number of successful extensions: 897
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)