Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3h07
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    33   0.002
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   2.2  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   2.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +2

Query: 647 CGGTIISRRAVLTAGHCL 700
           CG TIIS+R VLTA HC+
Sbjct: 188 CGATIISKRYVLTAAHCI 205


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = +2

Query: 170 FDWRAVVDFGLYNNLEKVEMEVYFEKEIKINKASQNTTFVVVRNN---WHHIIIRP 328
           +D + +V F L      +   VY E   K+N A +   F +       +HH   RP
Sbjct: 73  WDHKGIVYFELLPPNRTINSVVYIEHLTKLNNAIEEKRFELTNRKGVVFHHDDARP 128


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 170 FDWRAVVDFGLYNNLEKVEMEVYFEKEIKINKA 268
           +D++ +V F L +    +   VY E+  K+N A
Sbjct: 72  WDYKGIVYFELLSPNRTINSVVYIEQLTKLNNA 104


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 89  YSHFLLNTRKIRNINKYTFLTILPSQL 9
           Y    L+ +  RNI  + F T LPS L
Sbjct: 228 YQRLSLSFKLQRNIGYFVFQTYLPSIL 254


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 390 SFPLEFRIFRSNVKRSCK 337
           S  + +RIF++NVK + K
Sbjct: 514 SSKINYRIFKANVKEAVK 531


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 170 FDWRAVVDFGLYNNLEKVEMEVYFEKEIKINKA 268
           +D++ +V F L      +   VY E+  K+N A
Sbjct: 194 WDYKGIVYFELLPPNRTINSVVYIEQLTKLNNA 226


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 649 WWNHHF*ESSFDSRSL 696
           WWN      SFD +SL
Sbjct: 367 WWNMKISNLSFDKQSL 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,222
Number of Sequences: 438
Number of extensions: 4938
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)