Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3h06
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    29   0.50 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   0.50 
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    29   0.87 
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    29   0.87 
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   2.0  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    27   3.5  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    27   3.5  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    27   3.5  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    27   3.5  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   4.6  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    26   6.1  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   8.1  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    25   8.1  

>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
 Frame = +3

Query: 450 EDAIKTTNKEHDKEVKAKQEEYEKQIGY-LTYLGQDTNEALK-----KKNWYDVPPEASR 611
           ++A +   +EH KE K ++E+ E+QI + L   G+D N+ ++     KK   ++    S 
Sbjct: 169 QEAREAAIREHQKE-KERREQVEQQIIFDLATSGKDPNKIIQLSDSLKKQQENIASSVSN 227

Query: 612 YSRTNDIKDTYNKLVLKDEDGKPKNKLCGD 701
            SR++ I    + +    ED  P + L G+
Sbjct: 228 ISRSSSI--LLSDVQQVAEDTTPFSPLAGE 255


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
 Frame = +3

Query: 312  ETADKESRLNILKQKSKERLLKSGIPQTNVGKSEIINEHVNLFANLEDAIKTTNK----- 476
            E A K+S  N L+   KE  +   I     GK E   E   L + LED    TNK     
Sbjct: 1343 EKALKDSEKNFLR---KEAEMTENIHSLEEGKEETKKEIAELSSRLEDNQLATNKLKNQL 1399

Query: 477  EH-DKEVKAKQEEYEKQIGYLTYLGQD-TNEALKKKNWYDVPPE 602
            +H ++E++ K++  +++   +  L +  +N+  K+ +  D   E
Sbjct: 1400 DHLNQEIRLKEDVLKEKESLIISLEESLSNQRQKESSLLDAKNE 1443


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +3

Query: 348 KQKSKERLLKSGIPQTNVGKSEIINEHVNLFAN 446
           K+K K  L    I   NVGKS +IN  VN  AN
Sbjct: 263 KKKLKSSLTVGVIGYPNVGKSSVINALVNRSAN 295


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 387 PQTNVGKSEIINEHVNLFANLEDAIKTTNKEHDKEVKAKQEEYEKQIGYL-TYLGQDTNE 563
           P+  +GK+    +   LFA+L   I  T+    +EV A  E+  +Q G     L QD  E
Sbjct: 200 PELPLGKNSGNRQSSKLFADLSKPIIETDAAEIEEVSA--EKARRQFGKNGIRLSQDAQE 257

Query: 564 ALKKKNWYD 590
             K+K  Y+
Sbjct: 258 EEKQKKKYE 266


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 23/84 (27%), Positives = 37/84 (44%)
 Frame = +3

Query: 390 QTNVGKSEIINEHVNLFANLEDAIKTTNKEHDKEVKAKQEEYEKQIGYLTYLGQDTNEAL 569
           Q    K E+++ +V         +  +N+EH KEV+A Q +    +   T L    +E  
Sbjct: 482 QEQARKLEVLDLNVKSSREQLQYVSKSNQEHKKEVEALQLQL---VNSSTELESVKSENE 538

Query: 570 KKKNWYDVPPEASRYSRTNDIKDT 641
           K KN   +  E  +   TN+ K T
Sbjct: 539 KLKNELVLEIEKRKKYETNEAKIT 562


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +3

Query: 435 LFANLEDAIKTTNKEHDKEVKAKQEEYEKQIGYLTYLGQDTNEALKKKNWYDVPPEASR- 611
           L    ++A K ++      ++  Q+  + Q  Y  +L + +N   +  +  DV  + S+ 
Sbjct: 18  LLRRQKEAAKNSSTNGSVNIEGTQDSNDLQ--YNAHLFKSSNPKEEYDSAIDVRNDISQD 75

Query: 612 ---YSRTNDIKDTYNKLVLKDEDGK 677
              Y RTND+ D+Y +LV + E  K
Sbjct: 76  EDDYKRTNDVNDSY-RLVRQYEAPK 99


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 354 KSKERLLKSGIPQTNVGKSEIINEHVNLFANL 449
           K+ E +   G+P TN+G ++I++ ++ L   L
Sbjct: 74  KALEYIKSKGMPLTNIGPADIVDGNLKLILGL 105


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 636 LLCHWCVNI*KPLVEHHTNFSFLKLHLYLVQ-DKLNSQFVFHILLVWPLPLY 484
           LLC +  ++  P  + H  F  + +H+ +VQ   +NS   F  LL   + L+
Sbjct: 290 LLCFFLYSLLTPFFDIHLQFQLIVMHMSIVQVGFINSVKTFGSLLTCSVCLF 341


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 513  YEKQIGYLTYLGQDTNEALKKKNWY 587
            Y K IG LT+L  + N+ L   +W+
Sbjct: 1055 YAKSIGLLTFLPNELNQKLLTLDWF 1079


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +3

Query: 312 ETADKESRLNILKQKS---KERLLKSGIPQTNVGKSEIINEHVNLFANLEDAIKTTNKEH 482
           ETA    +  + K+KS   K+    S I + N  + E  +       +L +  +TT++  
Sbjct: 291 ETAILNRKPTLRKKKSIPKKQNESSSTIQKENTVQQEASSSEEEAVKSLPETQRTTSRIE 350

Query: 483 DKEVKAKQEEYE 518
            +E + K+EE E
Sbjct: 351 TQEEEIKEEEME 362


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 483 DKEVKAKQEEYEKQIGYLTYLGQDTNEALKKK 578
           +K V+ K E+YE  I + T   + +NEAL+ +
Sbjct: 666 EKGVEIKFEKYEASIDFSTMKVECSNEALRSR 697


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
 Frame = +3

Query: 450  EDAIKTTNKEHDKEVKAKQEEYEKQIGYLTYLGQDTNEALKKK--NWYDVPPEA------ 605
            E  IK  N    +E +  +  Y ++ G +    +      K    NWY VPP        
Sbjct: 1095 ESFIKIRNGNVKEEARRTRNAYTQKSGEVECFMETCTPIAKPAPANWYPVPPPGFNSSLL 1154

Query: 606  SRYSRTNDIKD 638
            SR +++N  KD
Sbjct: 1155 SRLTQSNQSKD 1165


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 526 ICFSYSS-CLAFTSLSCSLFVVLIASSRFANKLTCSFIISLFPTF 395
           ICF+  + C+A+  +S  +    I   RF      SF+ S+ PTF
Sbjct: 29  ICFALLAVCIAYDQISYQMQKGHIPGPRFKIPFMGSFLDSMKPTF 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,987
Number of Sequences: 5004
Number of extensions: 42608
Number of successful extensions: 179
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)