Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3h06
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024751-6|AAK21506.1| 270|Caenorhabditis elegans Hypothetical ... 50 1e-06
Z68879-4|CAA93085.1| 215|Caenorhabditis elegans Hypothetical pr... 32 0.47
Z92777-7|CAI79120.1| 294|Caenorhabditis elegans Hypothetical pr... 31 0.61
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 30 1.4
U41010-3|AAF98587.1| 655|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical ... 30 1.4
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 30 1.4
Z49968-9|CAB54271.3| 492|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF022980-10|AAG24193.1| 350|Caenorhabditis elegans Serpentine r... 29 2.5
Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z49968-11|CAN86616.1| 492|Caenorhabditis elegans Hypothetical p... 29 3.3
Z49968-10|CAB54270.3| 490|Caenorhabditis elegans Hypothetical p... 29 3.3
Z49968-6|CAB54272.2| 474|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z81136-5|CAB03460.2| 733|Caenorhabditis elegans Hypothetical pr... 29 4.3
U70854-12|AAB09150.1| 263|Caenorhabditis elegans Hypothetical p... 29 4.3
AL132895-3|CAC14400.1| 676|Caenorhabditis elegans Hypothetical ... 29 4.3
Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 28 5.7
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 28 5.7
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 28 5.7
AF016654-8|AAB66025.2| 331|Caenorhabditis elegans Hypothetical ... 28 7.6
AC006644-6|AAZ91358.1| 958|Caenorhabditis elegans Hypothetical ... 28 7.6
>AC024751-6|AAK21506.1| 270|Caenorhabditis elegans Hypothetical
protein Y18H1A.2 protein.
Length = 270
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 12/106 (11%)
Frame = +3
Query: 318 ADKESRLNILKQKSKERL---LKSGIPQTNVGKSEIIN-----EHVNLFANLEDAIKTT- 470
A+ E RL L+ ++ +R+ G ++ G ++ ++ HVNLF +LE +
Sbjct: 25 AENERRLMQLRARADQRMETMFSGGAGSSSAGAAKDVSISDETGHVNLFQDLEREERKNY 84
Query: 471 ---NKEHDKEVKAKQEEYEKQIGYLTYLGQDTNEALKKKNWYDVPP 599
N++++ E A+++E+E ++G Y +TN+ KKK WY+ P
Sbjct: 85 GSGNRDYEAEKAAEKKEWESKMGIQVYFADNTNDLNKKKEWYEELP 130
>Z68879-4|CAA93085.1| 215|Caenorhabditis elegans Hypothetical
protein K08F4.5 protein.
Length = 215
Score = 31.9 bits (69), Expect = 0.47
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +3
Query: 450 EDAIKTTNKEHDKEVKAKQEEYEKQIGYLTYLGQDTNEALKKKNWYDVPPEASRYSRTND 629
E+ T KE KE K K+EE +++ + G+ N +KKN D E + +D
Sbjct: 82 EEKKDATKKEEAKEEK-KEEERKEEKKEESKEGEKKNSGEEKKNSGDEKKEEG--GKKDD 138
Query: 630 IKDTYNKLVL-----KDEDGKPKNKL 692
KD K KDED KPK ++
Sbjct: 139 AKDGEKKEEAKEGDKKDEDQKPKKEI 164
>Z92777-7|CAI79120.1| 294|Caenorhabditis elegans Hypothetical
protein C17H1.10 protein.
Length = 294
Score = 31.5 bits (68), Expect = 0.61
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +3
Query: 348 KQKSKERLLKSGIPQTNVGKSEIINEHVNLFANLEDAIKTTNKEHDK---EVKAKQEEYE 518
++K+ E + K + Q N EH A LE IK K+ +K EVK ++ +E
Sbjct: 11 ERKAAEEMHKKSVEQLN-------EEHKTNMAKLEMQIKKIKKKGEKDVREVKKQRANFE 63
Query: 519 KQIGYLTYLGQDTNEALKKK 578
KQ +T E LK+K
Sbjct: 64 KQRAEYRVEHHETMEKLKQK 83
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = +3
Query: 447 LEDAIKTTNKEHDKEVKAKQEEYEKQIGYLTYLGQDTNEALKKKNWYDVPPEASRYS 617
+EDAIK+ ++ ++KE++ + YE+++ G + + +K ++ D SR S
Sbjct: 304 MEDAIKSMSRSNNKELEEQCRLYERELKEEDERGDNDEDVVKMRSSADTFKNQSRRS 360
>U41010-3|AAF98587.1| 655|Caenorhabditis elegans Hypothetical
protein T05A12.3 protein.
Length = 655
Score = 30.3 bits (65), Expect = 1.4
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Frame = +3
Query: 321 DKESRLNILKQKSKERLLKSGIPQTNVGKSEIINEHVNLFANLEDAIKTTNKEHDKEVKA 500
+KE +++ ER IP+ N G S + +VN A + ++ E KE K
Sbjct: 51 EKELAKKRKEREEDERRKNFTIPKRNEGPSSSSSSNVN-SAAVRAVLERQRAE--KEAKE 107
Query: 501 KQEEYEKQIGYLTYLGQDTNEALKKKN---WYDVPPEASRYSRTNDIKDTYNKLVLKDED 671
K+ + EKQ + + + +A KK DV +R+ N+ +T K K+E+
Sbjct: 108 KKLDSEKQKLMMLRMQANGGKATKKMGKQFGLDVISLQTRFGGNNEHLETLQKRKWKEEE 167
>AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical
protein F41E6.9 protein.
Length = 217
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Frame = +3
Query: 324 KESRLNILKQKSKERLLKSGIPQT--NVGKSEI----INEHVNLFANLEDAIKTTNKEHD 485
K+ L +LKQK K + Q N+ +S + ++ A ++D +KT KE+
Sbjct: 61 KQKALRVLKQKRMYENQKGQLDQQAFNMDQSNFAIQGMKDNQVTVAAMKDGLKTMQKEYK 120
Query: 486 KEVKAKQEEYEKQIGYLTYLGQDTNEALKKKNWYDVP 596
K + E+ + Q+ + + + EA+ ++ YD P
Sbjct: 121 KMNIDQIEDLQDQMEDMLDMNNEIQEAMSRQ--YDTP 155
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = +3
Query: 447 LEDAIKTTNKEHDKEVKAKQEEYEKQIGYLTYLGQDTNEALKKKNWYDVPPEASRYS 617
+EDAIK+ ++ ++KE++ + YE+++ G + + +K ++ D SR S
Sbjct: 304 MEDAIKSMSRSNNKELEEQCRLYERELKEEDERGDNDEDVVKMRSSADTFKNQSRRS 360
>Z49968-9|CAB54271.3| 492|Caenorhabditis elegans Hypothetical
protein M110.5b protein.
Length = 492
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +3
Query: 387 PQTNVGKSEIINEHVNLFANLEDAIKTTNKEHDKEVKAKQEEYEKQIGYLTYLGQDTNEA 566
P TN+ + + H + FAN D +K+V + +E + K + +G +
Sbjct: 383 PSTNIQQQQSSLHHASTFANFGDNKFRAETWSEKKVTSLEEAFTKLVDMDALVGGQGIKE 442
Query: 567 LKKKNWYDV--PPEAS 608
KK + + PP+AS
Sbjct: 443 TKKNPFEHILNPPKAS 458
>AF022980-10|AAG24193.1| 350|Caenorhabditis elegans Serpentine
receptor, class j protein44 protein.
Length = 350
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Frame = -3
Query: 684 FLVFHLHLSKLAYYRYLLCHWCV--------NI*KPLVEHHTNFSFLKL--HLYLVQDKL 535
+L+F SK YRYLL ++ + N+ PL H +SF + H + +
Sbjct: 27 YLIFSEKSSKFGNYRYLLLYFAIFNLLYSIMNVLVPLDIHTFGYSFFLIVRHGWFQTEGN 86
Query: 534 NSQFVFHILL 505
+SQ FH+L+
Sbjct: 87 SSQLNFHMLI 96
>Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical protein
K04D7.5b protein.
Length = 1287
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +3
Query: 489 EVKAKQEEYEKQIGYLTYLGQDTNEALKKKNWYDVPPEASRYSRTNDIKDTYNKLVLKDE 668
+ + + E YE Y+ G +T +K++W +PP R+ +DI + +
Sbjct: 1197 KARPRLENYE----YIDLTGLETMSKREKRDWNSIPP---RFETVDDIDQVMGSVYRASK 1249
Query: 669 DGKPKNKL--CGD 701
+ P N + CG+
Sbjct: 1250 NEPPSNLVVKCGE 1262
>Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical protein
K04D7.5a protein.
Length = 1338
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +3
Query: 489 EVKAKQEEYEKQIGYLTYLGQDTNEALKKKNWYDVPPEASRYSRTNDIKDTYNKLVLKDE 668
+ + + E YE Y+ G +T +K++W +PP R+ +DI + +
Sbjct: 1197 KARPRLENYE----YIDLTGLETMSKREKRDWNSIPP---RFETVDDIDQVMGSVYRASK 1249
Query: 669 DGKPKNKL--CGD 701
+ P N + CG+
Sbjct: 1250 NEPPSNLVVKCGE 1262
>Z49968-11|CAN86616.1| 492|Caenorhabditis elegans Hypothetical
protein M110.5d protein.
Length = 492
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 387 PQTNVGKSEIINEHVNLFANLEDAIKTTNKEHDKEVKAKQEEYEKQIGYLTYLGQDTNEA 566
P TN+ + + H + FAN D T E K+V + +E + K + +G +
Sbjct: 385 PSTNIQQQQSSLHHASTFANFGDNKAETWSE--KKVTSLEEAFTKLVDMDALVGGQGIKE 442
Query: 567 LKKKNWYDV--PPEAS 608
KK + + PP+AS
Sbjct: 443 TKKNPFEHILNPPKAS 458
>Z49968-10|CAB54270.3| 490|Caenorhabditis elegans Hypothetical
protein M110.5a protein.
Length = 490
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 387 PQTNVGKSEIINEHVNLFANLEDAIKTTNKEHDKEVKAKQEEYEKQIGYLTYLGQDTNEA 566
P TN+ + + H + FAN D T E K+V + +E + K + +G +
Sbjct: 383 PSTNIQQQQSSLHHASTFANFGDNKAETWSE--KKVTSLEEAFTKLVDMDALVGGQGIKE 440
Query: 567 LKKKNWYDV--PPEAS 608
KK + + PP+AS
Sbjct: 441 TKKNPFEHILNPPKAS 456
>Z49968-6|CAB54272.2| 474|Caenorhabditis elegans Hypothetical
protein M110.5c protein.
Length = 474
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 387 PQTNVGKSEIINEHVNLFANLEDAIKTTNKEHDKEVKAKQEEYEKQIGYLTYLGQDTNEA 566
P TN+ + + H + FAN D T E K+V + +E + K + +G +
Sbjct: 367 PSTNIQQQQSSLHHASTFANFGDNKAETWSE--KKVTSLEEAFTKLVDMDALVGGQGIKE 424
Query: 567 LKKKNWYDV--PPEAS 608
KK + + PP+AS
Sbjct: 425 TKKNPFEHILNPPKAS 440
>Z81136-5|CAB03460.2| 733|Caenorhabditis elegans Hypothetical
protein W02B8.4 protein.
Length = 733
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = +3
Query: 462 KTTNKEHDKEVKAKQEEYEKQIGYLTYLGQD--TNEALKKKNWYDVPPEASRYSRTNDIK 635
K K+H+K AK + L L D N LK+K ++D R SRT
Sbjct: 108 KYDKKKHEK-CSAKAHDITSHAKCLVDLENDGLKNRLLKRKKYFDQSNSIERKSRTTKKS 166
Query: 636 DTYNKL 653
D KL
Sbjct: 167 DKLKKL 172
>U70854-12|AAB09150.1| 263|Caenorhabditis elegans Hypothetical
protein F38A5.6 protein.
Length = 263
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Frame = +3
Query: 345 LKQKSKERLLKSGIPQTNVGKSEIINEHVNLFANLEDAIKTT-----NKEHDKEVKAKQE 509
++++++ L+K T +SEI+N +V NL AI + + + KEVKAK E
Sbjct: 139 VQKRTRSHLIKKMRLYTGE-ESEILNSNVENLNNLLHAIDDSRHHVKSSKTTKEVKAKGE 197
Query: 510 EYEKQI 527
Y K I
Sbjct: 198 TYRKAI 203
>AL132895-3|CAC14400.1| 676|Caenorhabditis elegans Hypothetical
protein Y59A8A.3 protein.
Length = 676
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 459 IKTTNKEHDKEVKAKQEEYEK 521
+KT KEH+ +++ KQEE++K
Sbjct: 295 LKTIRKEHEAQLQKKQEEWKK 315
>Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical protein
H40L08.3 protein.
Length = 1026
Score = 28.3 bits (60), Expect = 5.7
Identities = 26/123 (21%), Positives = 54/123 (43%)
Frame = +3
Query: 321 DKESRLNILKQKSKERLLKSGIPQTNVGKSEIINEHVNLFANLEDAIKTTNKEHDKEVKA 500
D S N++K+ + E+ L +TN +I E N ++ +KT ++ ++
Sbjct: 695 DINSERNLIKENT-EKFLNLFTTRTNNELQQIKTEFDETMKNYKERVKTFERDFNESEAI 753
Query: 501 KQEEYEKQIGYLTYLGQDTNEALKKKNWYDVPPEASRYSRTNDIKDTYNKLVLKDEDGKP 680
KQ + I L L +D E+ +K Y+ E +++ N++ +D +
Sbjct: 754 KQ----RTISNLKGLYED--ESTHQKRKYETMIEDQIRKSFRQLEEKQNEIKTIKDDAER 807
Query: 681 KNK 689
K++
Sbjct: 808 KHR 810
>Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical protein
H40L08.3 protein.
Length = 1026
Score = 28.3 bits (60), Expect = 5.7
Identities = 26/123 (21%), Positives = 54/123 (43%)
Frame = +3
Query: 321 DKESRLNILKQKSKERLLKSGIPQTNVGKSEIINEHVNLFANLEDAIKTTNKEHDKEVKA 500
D S N++K+ + E+ L +TN +I E N ++ +KT ++ ++
Sbjct: 695 DINSERNLIKENT-EKFLNLFTTRTNNELQQIKTEFDETMKNYKERVKTFERDFNESEAI 753
Query: 501 KQEEYEKQIGYLTYLGQDTNEALKKKNWYDVPPEASRYSRTNDIKDTYNKLVLKDEDGKP 680
KQ + I L L +D E+ +K Y+ E +++ N++ +D +
Sbjct: 754 KQ----RTISNLKGLYED--ESTHQKRKYETMIEDQIRKSFRQLEEKQNEIKTIKDDAER 807
Query: 681 KNK 689
K++
Sbjct: 808 KHR 810
>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical protein
ZK662.4 protein.
Length = 1440
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +3
Query: 456 AIKTTNKEHDKEVKAKQEEYEKQIGYLTYLGQDTNEALKKKNWYDVPPEASRYSRTNDIK 635
AI N + V+ QEE E++ Y ++ + + ++ D P +A+ Y+ IK
Sbjct: 1239 AIDLANMLNPDGVEYTQEEEEEE----EY--EEMSRSPTEETSDDEPSQAAVYNNAPVIK 1292
Query: 636 DTYNKLVLKDEDG 674
TY K L +EDG
Sbjct: 1293 RTYRKRELSNEDG 1305
>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical protein
ZK662.4 protein.
Length = 1440
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +3
Query: 456 AIKTTNKEHDKEVKAKQEEYEKQIGYLTYLGQDTNEALKKKNWYDVPPEASRYSRTNDIK 635
AI N + V+ QEE E++ Y ++ + + ++ D P +A+ Y+ IK
Sbjct: 1239 AIDLANMLNPDGVEYTQEEEEEE----EY--EEMSRSPTEETSDDEPSQAAVYNNAPVIK 1292
Query: 636 DTYNKLVLKDEDG 674
TY K L +EDG
Sbjct: 1293 RTYRKRELSNEDG 1305
>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
Length = 1440
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +3
Query: 456 AIKTTNKEHDKEVKAKQEEYEKQIGYLTYLGQDTNEALKKKNWYDVPPEASRYSRTNDIK 635
AI N + V+ QEE E++ Y ++ + + ++ D P +A+ Y+ IK
Sbjct: 1239 AIDLANMLNPDGVEYTQEEEEEE----EY--EEMSRSPTEETSDDEPSQAAVYNNAPVIK 1292
Query: 636 DTYNKLVLKDEDG 674
TY K L +EDG
Sbjct: 1293 RTYRKRELSNEDG 1305
>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +3
Query: 456 AIKTTNKEHDKEVKAKQEEYEKQIGYLTYLGQDTNEALKKKNWYDVPPEASRYSRTNDIK 635
AI N + V+ QEE E++ Y ++ + + ++ D P +A+ Y+ IK
Sbjct: 1239 AIDLANMLNPDGVEYTQEEEEEE----EY--EEMSRSPTEETSDDEPSQAAVYNNAPVIK 1292
Query: 636 DTYNKLVLKDEDG 674
TY K L +EDG
Sbjct: 1293 RTYRKRELSNEDG 1305
>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +3
Query: 456 AIKTTNKEHDKEVKAKQEEYEKQIGYLTYLGQDTNEALKKKNWYDVPPEASRYSRTNDIK 635
AI N + V+ QEE E++ Y ++ + + ++ D P +A+ Y+ IK
Sbjct: 1239 AIDLANMLNPDGVEYTQEEEEEE----EY--EEMSRSPTEETSDDEPSQAAVYNNAPVIK 1292
Query: 636 DTYNKLVLKDEDG 674
TY K L +EDG
Sbjct: 1293 RTYRKRELSNEDG 1305
>AF016654-8|AAB66025.2| 331|Caenorhabditis elegans Hypothetical
protein C17A2.1 protein.
Length = 331
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 41 FCKQNSEQNRTSK--RVGVGGHYVRQS*KIHYSYRFQLKL 154
FC N + ++TS+ R+ GHYV S + Y+ QLKL
Sbjct: 255 FCIWNIKFHKTSQTMRIVAQGHYVAVSSALRVYYKNQLKL 294
>AC006644-6|AAZ91358.1| 958|Caenorhabditis elegans Hypothetical
protein F55A3.1 protein.
Length = 958
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +3
Query: 390 QTNVGKSEIINEHVNLFANLEDAIKTTNKEHDKEVKAKQEEYEKQIGY 533
+ N G+ +++NE+ ED + + E D + ++EE + + GY
Sbjct: 222 EENEGEDDVVNENNESSDESEDDEEDEDDEEDDDEDDEEEEEDSESGY 269
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,244,078
Number of Sequences: 27780
Number of extensions: 235856
Number of successful extensions: 1000
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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