Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3g23
(686 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC104793-1|AAI04794.1| 594|Homo sapiens nucleolar protein 5A pr... 31 3.8
BC104791-1|AAI04792.1| 594|Homo sapiens nucleolar protein 5A (5... 31 3.8
BC018421-1|AAH18421.1| 447|Homo sapiens Unknown (protein for IM... 31 3.8
AL049712-4|CAC01444.2| 594|Homo sapiens nucleolar protein 5A (5... 31 3.8
AL049712-3|CAI22416.1| 218|Homo sapiens nucleolar protein 5A (5... 31 3.8
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein. 31 3.8
BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetit... 31 5.1
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 31 5.1
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 31 5.1
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 31 5.1
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 31 5.1
AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear... 31 5.1
AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear... 31 5.1
BC025237-1|AAH25237.1| 352|Homo sapiens hematopoietic SH2 domai... 30 6.7
BC016826-1|AAH16826.1| 264|Homo sapiens HSH2D protein protein. 30 6.7
AY319652-1|AAQ81285.1| 352|Homo sapiens ALX protein. 30 6.7
AK027792-1|BAB55372.1| 352|Homo sapiens protein ( Homo sapiens ... 30 6.7
X61498-1|CAA43715.1| 933|Homo sapiens NF-kB subunit protein. 30 8.9
BT009769-1|AAP88771.1| 899|Homo sapiens nuclear factor of kappa... 30 8.9
BC002844-1|AAH02844.1| 899|Homo sapiens nuclear factor of kappa... 30 8.9
>BC104793-1|AAI04794.1| 594|Homo sapiens nucleolar protein 5A
protein.
Length = 594
Score = 31.1 bits (67), Expect = 3.8
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +2
Query: 524 PSSLLGNNWFDNLQDLSEFYEDDQALRKEVETITDRIIAAEVKASEV 664
P+S+ G + +++ FYE + RK ++ + + ++ AE A+E+
Sbjct: 389 PTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQAEEAAAEI 435
>BC104791-1|AAI04792.1| 594|Homo sapiens nucleolar protein 5A
(56kDa with KKE/D repeat) protein.
Length = 594
Score = 31.1 bits (67), Expect = 3.8
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +2
Query: 524 PSSLLGNNWFDNLQDLSEFYEDDQALRKEVETITDRIIAAEVKASEV 664
P+S+ G + +++ FYE + RK ++ + + ++ AE A+E+
Sbjct: 389 PTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQAEEAAAEI 435
>BC018421-1|AAH18421.1| 447|Homo sapiens Unknown (protein for
IMAGE:4448930) protein.
Length = 447
Score = 31.1 bits (67), Expect = 3.8
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +2
Query: 524 PSSLLGNNWFDNLQDLSEFYEDDQALRKEVETITDRIIAAEVKASEV 664
P+S+ G + +++ FYE + RK ++ + + ++ AE A+E+
Sbjct: 385 PTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQAEEAAAEI 431
>AL049712-4|CAC01444.2| 594|Homo sapiens nucleolar protein 5A
(56kDa with KKE/D repeat) protein.
Length = 594
Score = 31.1 bits (67), Expect = 3.8
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +2
Query: 524 PSSLLGNNWFDNLQDLSEFYEDDQALRKEVETITDRIIAAEVKASEV 664
P+S+ G + +++ FYE + RK ++ + + ++ AE A+E+
Sbjct: 389 PTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQAEEAAAEI 435
>AL049712-3|CAI22416.1| 218|Homo sapiens nucleolar protein 5A
(56kDa with KKE/D repeat) protein.
Length = 218
Score = 31.1 bits (67), Expect = 3.8
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +2
Query: 524 PSSLLGNNWFDNLQDLSEFYEDDQALRKEVETITDRIIAAEVKASEV 664
P+S+ G + +++ FYE + RK ++ + + ++ AE A+E+
Sbjct: 129 PTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQAEEAAAEI 175
>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
Length = 1349
Score = 31.1 bits (67), Expect = 3.8
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 378 PSCRDRARPTLSTP*AKRT-TIFSDSTKNLFSPSSMSTARPRTSNDPPA 521
P+ + PT ST A T TI + +T + SP+S +T+ P+TS A
Sbjct: 1141 PTTSTNSAPTTSTISASTTSTISAPTTSTISSPTSSTTSTPQTSKTSAA 1189
>BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 327 RRNTCGAPAVPPLSRQHPSCRDRARPTLSTP*AKRTTI---FSDSTKNLFSPSSMSTARP 497
RR +PA PP R+ P+ R R T S P +R+ +S + +SPS R
Sbjct: 556 RRRRSPSPAPPPRRRRTPTPPPRRR-TPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRT 614
Query: 498 RTSNDPPARR 527
+ PP RR
Sbjct: 615 ASPPPPPKRR 624
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 327 RRNTCGAPAVPPLSRQHPSCRDRARPTLSTP*AKRTTI---FSDSTKNLFSPSSMSTARP 497
RR +PA PP R+ P+ R R T S P +R+ +S + +SPS R
Sbjct: 556 RRRRSPSPAPPPRRRRTPTPPPRRR-TPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRT 614
Query: 498 RTSNDPPARR 527
+ PP RR
Sbjct: 615 ASPPPPPKRR 624
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 327 RRNTCGAPAVPPLSRQHPSCRDRARPTLSTP*AKRTTI---FSDSTKNLFSPSSMSTARP 497
RR +PA PP R+ P+ R R T S P +R+ +S + +SPS R
Sbjct: 565 RRRRSPSPAPPPRRRRTPTPPPRRR-TPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRT 623
Query: 498 RTSNDPPARR 527
+ PP RR
Sbjct: 624 ASPPPPPKRR 633
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 327 RRNTCGAPAVPPLSRQHPSCRDRARPTLSTP*AKRTTI---FSDSTKNLFSPSSMSTARP 497
RR +PA PP R+ P+ R R T S P +R+ +S + +SPS R
Sbjct: 556 RRRRSPSPAPPPRRRRTPTPPPRRR-TPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRT 614
Query: 498 RTSNDPPARR 527
+ PP RR
Sbjct: 615 ASPPPPPKRR 624
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 327 RRNTCGAPAVPPLSRQHPSCRDRARPTLSTP*AKRTTI---FSDSTKNLFSPSSMSTARP 497
RR +PA PP R+ P+ R R T S P +R+ +S + +SPS R
Sbjct: 565 RRRRSPSPAPPPRRRRTPTPPPRRR-TPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRT 623
Query: 498 RTSNDPPARR 527
+ PP RR
Sbjct: 624 ASPPPPPKRR 633
>AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 327 RRNTCGAPAVPPLSRQHPSCRDRARPTLSTP*AKRTTI---FSDSTKNLFSPSSMSTARP 497
RR +PA PP R+ P+ R R T S P +R+ +S + +SPS R
Sbjct: 554 RRRRSPSPAPPPRRRRTPTPPPRRR-TPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRT 612
Query: 498 RTSNDPPARR 527
+ PP RR
Sbjct: 613 ASPPPPPKRR 622
>AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 327 RRNTCGAPAVPPLSRQHPSCRDRARPTLSTP*AKRTTI---FSDSTKNLFSPSSMSTARP 497
RR +PA PP R+ P+ R R T S P +R+ +S + +SPS R
Sbjct: 554 RRRRSPSPAPPPRRRRTPTPPPRRR-TPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRT 612
Query: 498 RTSNDPPARR 527
+ PP RR
Sbjct: 613 ASPPPPPKRR 622
>BC025237-1|AAH25237.1| 352|Homo sapiens hematopoietic SH2 domain
containing protein.
Length = 352
Score = 30.3 bits (65), Expect = 6.7
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 458 KSLQPLIDEYRQTTDEQRSACPPSSLLGNNWFDNLQDLSEFYEDDQALRKEVET 619
K +P + R TT E S+CPP S LG + L E Q +R+++++
Sbjct: 170 KERKPSAEMNRITTKEATSSCPPKSPLGETRQKLWRSLKMLPERGQRVRQQLKS 223
>BC016826-1|AAH16826.1| 264|Homo sapiens HSH2D protein protein.
Length = 264
Score = 30.3 bits (65), Expect = 6.7
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 458 KSLQPLIDEYRQTTDEQRSACPPSSLLGNNWFDNLQDLSEFYEDDQALRKEVET 619
K +P + R TT E S+CPP S LG + L E Q +R+++++
Sbjct: 82 KERKPSAEMNRITTKEATSSCPPKSPLGETRQKLWRSLKMLPERGQRVRQQLKS 135
>AY319652-1|AAQ81285.1| 352|Homo sapiens ALX protein.
Length = 352
Score = 30.3 bits (65), Expect = 6.7
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 458 KSLQPLIDEYRQTTDEQRSACPPSSLLGNNWFDNLQDLSEFYEDDQALRKEVET 619
K +P + R TT E S+CPP S LG + L E Q +R+++++
Sbjct: 170 KERKPSAEMNRITTKEATSSCPPKSPLGETRQKLWRSLKMLPERGQRVRQQLKS 223
>AK027792-1|BAB55372.1| 352|Homo sapiens protein ( Homo sapiens
cDNA FLJ14886 fis, clone PLACE1003723. ).
Length = 352
Score = 30.3 bits (65), Expect = 6.7
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 458 KSLQPLIDEYRQTTDEQRSACPPSSLLGNNWFDNLQDLSEFYEDDQALRKEVET 619
K +P + R TT E S+CPP S LG + L E Q +R+++++
Sbjct: 170 KERKPSAEMNRITTKEATSSCPPKSPLGETRQKLWRSLKMLPERGQRVRQQLKS 223
>X61498-1|CAA43715.1| 933|Homo sapiens NF-kB subunit protein.
Length = 933
Score = 29.9 bits (64), Expect = 8.9
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 464 LQPLIDEYRQTTDEQRSACPPSSLLGNNWFDNLQDLSEF-YEDDQALRKEVETITDRIIA 640
L+ L+D YRQTT S L G + L+ LS+ E+ L + ET D++ +
Sbjct: 799 LRSLVDTYRQTTSPSGSLLRSYELAGGDLAGLLEALSDMGLEEGVRLLRGPET-RDKLPS 857
Query: 641 AEVK 652
EVK
Sbjct: 858 TEVK 861
>BT009769-1|AAP88771.1| 899|Homo sapiens nuclear factor of kappa
light polypeptide gene enhancer in B-cells 2 (p49/p100)
protein.
Length = 899
Score = 29.9 bits (64), Expect = 8.9
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 464 LQPLIDEYRQTTDEQRSACPPSSLLGNNWFDNLQDLSEF-YEDDQALRKEVETITDRIIA 640
L+ L+D YRQTT S L G + L+ LS+ E+ L + ET D++ +
Sbjct: 800 LRSLVDTYRQTTSPSGSLLRSYELAGGDLAGLLEALSDMGLEEGVRLLRGPET-RDKLPS 858
Query: 641 AEVK 652
EVK
Sbjct: 859 TEVK 862
>BC002844-1|AAH02844.1| 899|Homo sapiens nuclear factor of kappa
light polypeptide gene enhancer in B-cells 2 (p49/p100)
protein.
Length = 899
Score = 29.9 bits (64), Expect = 8.9
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 464 LQPLIDEYRQTTDEQRSACPPSSLLGNNWFDNLQDLSEF-YEDDQALRKEVETITDRIIA 640
L+ L+D YRQTT S L G + L+ LS+ E+ L + ET D++ +
Sbjct: 800 LRSLVDTYRQTTSPSGSLLRSYELAGGDLAGLLEALSDMGLEEGVRLLRGPET-RDKLPS 858
Query: 641 AEVK 652
EVK
Sbjct: 859 TEVK 862
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,238,956
Number of Sequences: 237096
Number of extensions: 1642234
Number of successful extensions: 5227
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5223
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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