Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3g22
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.80
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 29 0.80
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 27 1.8
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 2.4
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz... 27 3.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 4.3
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 26 4.3
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 5.6
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 5.6
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 25 7.5
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 25 9.9
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 25 9.9
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 9.9
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.7 bits (61), Expect = 0.80
Identities = 15/62 (24%), Positives = 24/62 (38%)
Frame = +1
Query: 397 QKTRNTQQRRVYVGTRARPSLEQTEPTIYVSPSNLPPPPKYECMAPPSYEEVVGVHYPGC 576
Q T N + Y + + + +YV P+ PPP + P Y + + V G
Sbjct: 1014 QPTGNITIQNAYFTAPQPMAADPFQSPLYVQPTGFQPPPSALPIQPTGYMQPIPVQATGY 1073
Query: 577 PP 582
P
Sbjct: 1074 QP 1075
>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 28.7 bits (61), Expect = 0.80
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 351 YRCSEDILDNLQKLRAKDAQHAAEEGI 431
Y+C ++ LD+L+KL KD+Q + E+ +
Sbjct: 112 YQCQKNDLDDLKKLSMKDSQPSLEKPV 138
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 27.5 bits (58), Expect = 1.8
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -1
Query: 449 RARVPTYTLLCCVLRVFCPKLL*--IVQDILRTTIMINRNIGNRPSNCFSVLLGATTSWV 276
R VP T L +R+ CP L ++ T I+ N N + FS L G SW
Sbjct: 437 RPPVPHPTSLYSQIRIGCPYLKPKLVISKSFGTLIVKNHNQLSLLKCTFSNLDGNDCSWF 496
Query: 275 SFTLNSSIL 249
S+ N+ +L
Sbjct: 497 SYLPNAIVL 505
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/50 (30%), Positives = 19/50 (38%)
Frame = +1
Query: 451 PSLEQTEPTIYVSPSNLPPPPKYECMAPPSYEEVVGVHYPGCPPQPITQP 600
PS + P SP+ +P P Y PSY + P P T P
Sbjct: 1556 PSYSPSSPGYSTSPAYMPSSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSP 1604
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = +1
Query: 451 PSLEQTEPTI-YVSPSNLPPPPKYECMAPPSYEEVVGVHYPGCPPQPITQP 600
PS T P+ SPS P P Y PSY + P P T P
Sbjct: 1597 PSYSPTSPSYSATSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSP 1646
>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 218
Score = 26.6 bits (56), Expect = 3.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +2
Query: 194 TLGVYYFGLFCCVLFW 241
+LG + G+FCC ++W
Sbjct: 145 SLGAFVCGVFCCYVYW 160
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 487 SPSNLPP--PPKYECMAPPSYEEVVGVHYPGCPPQPITQPI 603
+P +LPP PP APPS +G P PP P + PI
Sbjct: 419 TPPSLPPSAPPSLPPSAPPSLP--MGA--PAAPPLPPSAPI 455
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = +1
Query: 487 SPSNLPPPPKYECMAPPSYEEVVGV-HYP---GCPPQP 588
+PS +PP PK APP + V V P G PP P
Sbjct: 1087 APSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP 1124
Score = 25.0 bits (52), Expect = 9.9
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +1
Query: 388 SLGQKTRNTQQRRVYVGTRARPSL--EQTEPTIYVS-PSNLPPPPKYECMAPPSYEEVVG 558
S G + RN + V + RP+L E P+ + P PPP + + YE
Sbjct: 802 STGSQLRNVVPVSI-VTSGGRPALPDEMASPSSSIGHPLPSPPPADFNSLNVDFYEPHSY 860
Query: 559 VHYPGCPPQP 588
+ P PQP
Sbjct: 861 LESPAPEPQP 870
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -1
Query: 302 LLGATTSWVSFTLNSSILNESKI-IHNKIIQNNTR 201
L+GATT SF LNS++++ + + K+ ++N +
Sbjct: 208 LIGATTENPSFRLNSALISRCPVFVLKKLTRDNVK 242
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 448 RPSLEQTEPTIYVSPSNLPPPP 513
+P +QT I+ S S PPPP
Sbjct: 223 QPEFQQTTSPIFSSSSTPPPPP 244
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +3
Query: 156 FSVQLIKLCIINSLWACIILDYFVVYYFGFIQNGRI 263
FS + C++ S++ +I+ F Y GF + G++
Sbjct: 904 FSYKNFISCVLISVYQGLIIQLFTFYLIGFEEEGKM 939
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 7.5
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +1
Query: 376 TIYRSLGQKTRNTQQRRVYVGTRARPSLEQTEPTIYVSPSNLPPPPKY--ECMAPPSYEE 549
++ ++ G+K R ++ R G A P + ++ S LPPPP Y A + E
Sbjct: 87 SLSQNSGEK-RTPEEPRKLPGVPA-PQKQSEASSVNSSTEKLPPPPSYPGPNTAHKNVER 144
Query: 550 VVGVH-YPG 573
V+ ++ +PG
Sbjct: 145 VLAMYDFPG 153
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 208 LFWIILLCIILDSFKMEEFNVNE 276
L W+I+ CI+ K + N+N+
Sbjct: 240 LLWLIICCILFGCVKSGDLNLNK 262
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 208 LFWIILLCIILDSFKMEEFNVNE 276
L W+I+ CI+ K + N+N+
Sbjct: 207 LLWLIICCILFGCVKSGDLNLNK 229
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 448 RPSLEQTEPTIYVSPSNLPP--PPKYECMAPPS 540
+P+ Q+ P + ++PS+LPP P + PS
Sbjct: 443 QPAAPQSAPALSMNPSSLPPWQQPTQQSAVQPS 475
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,296
Number of Sequences: 5004
Number of extensions: 50738
Number of successful extensions: 181
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -