Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3g12
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    43   4e-05
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi...    31   0.13 
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    29   0.95 
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    28   1.3  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    28   1.7  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   2.2  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    27   2.9  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   2.9  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    27   3.8  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    26   5.1  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   6.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   8.9  

>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +1

Query: 526 VTENSFITKLKTSGRSLVVFYGSQTGTAEEFAGRLAKEG-MRYKMKGMVADPEECDMEEL 702
           V  +S +  ++    +  VF+GSQTGTAE+FA R + E    + +  MV D E  D+ +L
Sbjct: 37  VATDSIVELMEAEKLTAAVFFGSQTGTAEDFAYRFSTEAKANFNLTNMVFDLENYDLTDL 96


>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
           Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 190 HVTAFNTTLNLITMIYVTSELRDSVLSVRTSQYLVIKKVNGRL 62
           H T  NTT  L+    V S++R+S  S   + Y+V ++ N R+
Sbjct: 34  HSTGANTTPQLVMQYLVASDIRESTTSEGAAPYIVSEQHNVRI 76


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = -1

Query: 748 HTEKQPGSFQFLVAL*VLPYHILLDQPPYPSFYSACLLWQVDQRILPQYPSEIHRTLLN 572
           HTEK       + +L  L   +L  + PYP+      ++++ + ILP++PS I  + ++
Sbjct: 580 HTEKTD-----IWSLGCLVIEMLTSKHPYPNCDQMQAIFRIGENILPEFPSNISSSAID 633


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 574 LVVFYGSQTGTAEEFAGRLAKEGMRYKMKGMVADPEECDMEELTK 708
           + + YGS+TGTAE  A  L +   R     +V   ++ ++E L +
Sbjct: 6   IYILYGSETGTAEGLAESLFRSLTRMGYDVLVNSMDDFNLENLLR 50


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 553 LKTSGRSLVVFYGSQTGTAEEFAGRLAKEGMRYKMKGMVA 672
           LKTSG++ + + G   GTA+ FA       +  K+  ++A
Sbjct: 208 LKTSGQTKLTYIGFSQGTAQAFASLSIHPLLNDKINSLIA 247


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 700 VLPYHILLDQPPYPSFYSACLLWQVDQRILPQYPSE 593
           ++PY I +  P  PS   ACL+ +  QR+     +E
Sbjct: 69  LIPYKIAIKNPVIPSSSEACLIVKDPQRVYKDLVNE 104


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +1

Query: 478 KILLEKYSIQAAGSIQVTENSFITKL--KTSGRSLVVFYGSQTGTAEEFAGRLAKEGMRY 651
           + L + +  +      V   + + KL    SG  L + + S  GTAE  A RL       
Sbjct: 694 RTLTQSFGAEVRHQQNVDSRNALNKLIEGLSGPPLTILFASDGGTAENVAKRLQNRASAR 753

Query: 652 KMKGMVADPEECDMEEL 702
             K  +   ++  +EEL
Sbjct: 754 GSKCKIMAMDDFPIEEL 770


>SPAC2F7.03c |pom1||DYRK family protein kinase
            Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 658  SFYSACLLWQVDQRILPQYPSE 593
            SF S CL W  D+R+ PQ  ++
Sbjct: 970  SFISDCLKWDPDERMTPQQAAQ 991


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 577 VVFYGSQTGTAEEFAGRLAKEGMRYKMKGMVADPEECDME 696
           V+F G +  T  +F G++  E + Y +K  +  P   D+E
Sbjct: 428 VMFTGRELDTFMQFGGQVVNEFINYVVKVSLKYPRPADIE 467


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 193 THVTAFNTTLNLITMIYVTSELRDSV 116
           TH  +FNT++ ++ +I+  S  RD +
Sbjct: 402 THTASFNTSVQVLMLIFQASASRDFI 427


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 496  IFPEVFCPACFLF 458
            IF EVF PACF F
Sbjct: 1531 IFTEVFLPACFAF 1543


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 662  VWWLIQKNVIWKNSQSYKKLKTPWLFFCMATY 757
            VWW +     +    SY  L  PWLF+ +A +
Sbjct: 2032 VWWFM-----FARLPSYYVLSIPWLFYAVALF 2058


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,172
Number of Sequences: 5004
Number of extensions: 60849
Number of successful extensions: 161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)