Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3g10
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    27   2.1  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   3.7  
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   4.9  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    26   6.5  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   8.6  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.6  

>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 392 LPGVASCIYPFYGAEHTRTLVLSFLTQVSLCV 297
           LP +A C+    G + T+   +S LT +SLC+
Sbjct: 282 LPSLAECLVYSLGFQVTKAKQVSDLTDISLCM 313


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = +2

Query: 437 DCMDVENRPRGCAVFKHAYRERYPAANDHLIFQKINRTIRDSMWPNRLGFSYTLRDILRS 616
           D +DV     GC V +  +    PA  + L+   +   +  ++  +  G +Y L+ +L  
Sbjct: 492 DPLDVSTHRHGCCVVQRCFDHASPAQIEQLVEHIVPHAL--TLVQDAFG-NYVLQYVLEL 548

Query: 617 VNPNQMQ 637
            NPN  +
Sbjct: 549 NNPNHTE 555


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 23/80 (28%), Positives = 31/80 (38%)
 Frame = -1

Query: 543 LIF*NIKWSFAAGYRSLYACLKTAHPLGRFSTSIQS*PFSSWISAIFLHSSTWSSLLYIS 364
           LIF N+K+       SL  C      LGR   S        +++ I      W  L  +S
Sbjct: 52  LIFINLKYQSKKWLYSLVICKSLIALLGRKRLSANVRKIVRFLNVIICVIGLWKGLSAMS 111

Query: 363 ILRC*AYPYISSLISDTSLP 304
                     S LIS+T+LP
Sbjct: 112 GKNTFINGLQSYLISETALP 131


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 113 LFYCTFYKVITQYCSLFFIPLIKYF 39
           LF+C  YK+  Q C +  + L KYF
Sbjct: 348 LFFC-IYKIKFQKCDMNIVMLTKYF 371


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 221 NKITETPMEDENNEE 265
           N +  TP +DENNEE
Sbjct: 255 NAVPSTPADDENNEE 269


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +2

Query: 356 RRMDIYKRLLQVELCRNIALIHEENGYDCMDVENRPRGCAVFKHAYRERYPAAN 517
           RR  + +R+ +     N  L   EN + C+ +EN      V    +RE Y   N
Sbjct: 163 RRKILERRMRKRSNLSNRQLNTSENNWTCLSIENFGISIHVITKNFREYYKLDN 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,599
Number of Sequences: 5004
Number of extensions: 61767
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)