Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3g10
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688...    28   9.0  
07_03_1708 + 28868695-28869144,28869235-28869333,28869388-288694...    28   9.0  

>09_03_0047 -
           11867302-11867356,11867461-11868032,11868485-11868873,
           11869018-11869331,11871028-11871382,11872004-11872076
          Length = 585

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 518 DHLIFQKINRTIRDSMWPNRLGFSYTLRDILRSVNPNQMQQYRQIDYNDTVFTPQ--QIR 691
           DH+   K+  TI D       G+ +T  D+L + +PN ++       N  VF  Q  Q++
Sbjct: 197 DHVSGTKVGGTIFDET-----GYRHTAADLLAAGDPNNLRVLLHASVNRIVFNSQRGQLK 251

Query: 692 DMDTG 706
              TG
Sbjct: 252 PRATG 256


>07_03_1708 +
           28868695-28869144,28869235-28869333,28869388-28869460,
           28869534-28869976
          Length = 354

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 497 ERYPAANDHLIFQKINRTIRDSMWPNR 577
           E +  ANDH +  +  + + D MW NR
Sbjct: 322 EPFGQANDHALMVQFRQGLADDMWANR 348


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,074,474
Number of Sequences: 37544
Number of extensions: 360973
Number of successful extensions: 794
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)