Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3g08
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 59 5e-10
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 50 4e-07
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 40 2e-04
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 37 0.003
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 35 0.009
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 33 0.035
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 31 0.11
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 31 0.11
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 29 0.75
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 28 0.99
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 27 2.3
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 26 4.0
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 26 4.0
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 5.3
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 9.2
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos... 25 9.2
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 25 9.2
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 59.3 bits (137), Expect = 5e-10
Identities = 49/162 (30%), Positives = 84/162 (51%), Gaps = 13/162 (8%)
Frame = +2
Query: 194 SAWEISLLGSLPN----FGALLASPFCGLAFNILGRKYATIFFGLPYVIT-WTIISLTDN 358
SAW +LL N FGA+L+SPF +G+KY+ FF Y+I +++ +
Sbjct: 54 SAWRQALLTGTINAGCLFGAMLSSPFT----ERIGKKYSICFFSGVYIIAELLLVTAVPS 109
Query: 359 VILVLVAMSIAGVGVAGQNV-AIIYVSEIAHDSIRGGLTA----FSSSGYIIGL---LTS 514
I VLV +AGVG+ +V + Y SE+A IRG + A FS+ ++ + +
Sbjct: 110 WIQVLVGKILAGVGIGALSVLSPGYQSEVAPPQIRGAVVATYQIFSTGAALVAACINMGT 169
Query: 515 YILGGKLTYQQVVYTHLGFSVMTMLLLTLLRESPVFLVMKGR 640
+ L +++ ++ + ++ M+ + L ESP +L+ KGR
Sbjct: 170 HKLRKTASWRTSFGINMLWGILLMVGVLFLPESPRYLIYKGR 211
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 49.6 bits (113), Expect = 4e-07
Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 13/162 (8%)
Frame = +2
Query: 194 SAWEISLLGSLPN----FGALLASPFCGLAFNILGRKYATIFFGLPYVI-TWTIISLTDN 358
SAW +LL N FGA+L+SPF +G+KY+ FF Y+I +++ +
Sbjct: 54 SAWRQALLTGTVNAGCLFGAMLSSPFT----EAIGKKYSIAFFSGCYIIGQILLVTAVPS 109
Query: 359 VILVLVAMSIAGVGVAGQNV-AIIYVSEIAHDSIRGGLTA----FSSSGYIIGL---LTS 514
+ ++V G+ + +V + Y SE+A IRG + + F + G +I + +
Sbjct: 110 WVQIMVGKLFTGLTIGALSVLSPGYQSEVAPPQIRGAVVSTYQLFQTCGTLIAACINMGT 169
Query: 515 YILGGKLTYQQVVYTHLGFSVMTMLLLTLLRESPVFLVMKGR 640
+ L +++ ++ + + M+ + L ESP +L+ KGR
Sbjct: 170 HKLRKTASWRTSFGINILWGIFLMVGVLFLPESPRYLIYKGR 211
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 40.3 bits (90), Expect = 2e-04
Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Frame = +2
Query: 215 LGSLPNFGALLASPFCGLAFNILGRKYATIFFGLPYVITWTI-ISLTDNVILVLVAMSIA 391
+GSL FG +++SP + G++ + I F Y+I + ++ + + ++VA
Sbjct: 71 VGSL--FGCIISSPIA----DRFGKRLSIIGFCAVYIIGIIVQVTAVPSWVQIMVAKIWT 124
Query: 392 GVGVAGQNV-AIIYVSEIAHDSIRGGLTA----FSSSGYIIGL---LTSYILGGKLTYQQ 547
G+G+ +V A Y SE A SIRG + F + G I + ++ L ++
Sbjct: 125 GIGIGALSVLAPGYQSETAPPSIRGTVVVTYQLFVTGGIFIAACINMGTHKLHKTAQWRV 184
Query: 548 VVYTHLGFSVMTMLLLTLLRESPVFLVMKGR 640
+ +L + ++TM+ + L ESP +L+ G+
Sbjct: 185 SIGINLLWGIITMIGILFLPESPRYLIQVGK 215
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 36.7 bits (81), Expect = 0.003
Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Frame = +2
Query: 209 SLLGSLPNFGALLASPFCGLAFNILGRK---YATIFFGLPYVITWTIISLTDNVILVLVA 379
S +GS + P G+ NILGRK Y IFF +++ + + N+I ++V
Sbjct: 134 SWIGSAYVLASNAVLPAVGVFCNILGRKIVLYICIFF---FMLGSALCGASQNMIWLIVC 190
Query: 380 MSIAGVGVAG-QNVAIIYVSEIAHDSIRGGLTAFSSSGYIIGLLTSYILGG----KLTYQ 544
+I G+G G ++ I +S+I R + ++ + L+ I+GG + T++
Sbjct: 191 RAIQGLGGGGIISLVNIIISDITPLRTRPMYSGILATAWGAALVAGPIIGGAICQRTTWR 250
Query: 545 QVVYTHL-GFSVMTMLLLTLLRESP 616
+ + +L + T L++ L P
Sbjct: 251 WIFFINLPSGGIATALIVVFLHLLP 275
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 35.1 bits (77), Expect = 0.009
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 10/150 (6%)
Frame = +2
Query: 221 SLPNFGALLASPFCGLAFNILGRKYATIFFGLPYVITWTIISLTDNVIL-VLVAMSIAGV 397
S + GALL G + GRK I +I +I+ +T + + ++V + G
Sbjct: 134 SATSLGALLGGIIAGALADFFGRK-PVIAIASIIIIVGSIVQVTAHHLWHMIVGRFVIGW 192
Query: 398 GVAGQNVAI-IYVSEIAHDSIRGGL--------TAFSSSGYIIGLLTSYILGGKLTYQQV 550
GV ++ I +Y+SEIA IRG L TA Y I ++ G ++ +
Sbjct: 193 GVGIASLIIPLYLSEIAPSKIRGRLVIIYVLLITAGQVIAYGIDTAFEHVHNG---WRWM 249
Query: 551 VYTHLGFSVMTMLLLTLLRESPVFLVMKGR 640
V + + + +L L ESP LV K R
Sbjct: 250 VGLAMVPAAFQLFILIWLPESPRLLVKKER 279
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 33.1 bits (72), Expect = 0.035
Identities = 23/134 (17%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Frame = +2
Query: 209 SLLGSLPNFGALLASPFCGLAFNILGRKYATIFFGLPYVITWTIISLTDNVILVLVAMSI 388
S +G+ + PFCG+ ++GRK + ++ + N++ +++ ++
Sbjct: 128 SWIGTAYSLAETSILPFCGIMSEVVGRKIVLYTSIVLFLFGSAMCGAAQNMLWLVLCRAV 187
Query: 389 AGVGVAG-QNVAIIYVSEIAHDSIRGGLTAFSSSGYIIGLLTSYILGGKL----TYQQVV 553
G+G G ++ I +++I R T + + + ++GG + T++ +
Sbjct: 188 QGIGGGGIMSLVTIVIADITPLQTRPYYTGCMGVTWGVASVMGPLIGGAISQNTTWRWIF 247
Query: 554 YTHLGFSVMTMLLL 595
+ +L +++ LL
Sbjct: 248 FINLPTGGLSLALL 261
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 31.5 bits (68), Expect = 0.11
Identities = 21/119 (17%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Frame = +2
Query: 254 PFCGLAFNILGRKYATIFFGLPYVITWTIISLTDNVILVLVAMSIAGVGVAG-QNVAIIY 430
PFCG+ ++GRK + ++ + N++ +++ ++ G+G G ++ I
Sbjct: 143 PFCGIMSEVVGRKIVLYTSIVLFLFGSAMCGAAQNMLWLVLCRAVQGIGGGGITSLVTIV 202
Query: 431 VSEIAHDSIRGGLTAFSSSGYIIGLLTSYILGG----KLTYQQVVYTHLGFSVMTMLLL 595
+++I R T + + + ++GG K +++ + + +L +++ LL
Sbjct: 203 IADITPLQTRPYYTGCMGVTWGLASVMGPLIGGAISQKASWRWIFFINLPTGGLSLALL 261
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 31.5 bits (68), Expect = 0.11
Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Frame = +2
Query: 206 ISLLGSLPNFGALLASPFCGLAFNILGRKYATIFFGLPYVITWTIISLTD--NVILVLVA 379
+ ++ + G LL+SP G F G++ + + L Y IT I+ LT + + ++VA
Sbjct: 62 VGMVNTGTTVGCLLSSPL-GDRF---GKRKCIMGWTLVY-ITGVIVQLTTIPSWVQMMVA 116
Query: 380 MSIAGVGVAGQNV-AIIYVSEIAHDSIRGGLTA----FSSSGYIIGLLTS-----YILGG 529
G+G+ +V A Y SE + IRG + F + G I + Y
Sbjct: 117 KIWTGLGIGALSVIAPGYQSESSPPHIRGAIVTTYQLFITLGIFIAACINMGTHKYTTHP 176
Query: 530 KLTYQQVVYTHLGFSVMTMLLLTLLRESPVFLVMKGR 640
+ ++ + +L + ++ + L ESP +L +KGR
Sbjct: 177 EAQWRVPIGINLLWGILMFFGMLFLPESPRYLAVKGR 213
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 28.7 bits (61), Expect = 0.75
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 347 LTDNVILVLVAMSIAGVGVAGQNVAIIYVSEIAHDSIRGGLTAFSSSGYII 499
LT+ I++ A AGVG+A Q VA + ++ D RG L G ++
Sbjct: 295 LTEQRIMIFGA-GTAGVGIANQIVAGMVTDGLSLDKARGNLFMIDRCGLLL 344
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 28.3 bits (60), Expect = 0.99
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Frame = +2
Query: 254 PFCGLAFNILGRKYATIFFGLPYVITWTIISLTDNVILVLVAMSIAGVGVAG-QNVAIIY 430
P G +I GR+ +F + + ++ ++ + +A ++AG+G G ++ I
Sbjct: 84 PLYGRLSDIFGRRPTVVFANAAFTLGTFWCGISRSLPELCMARALAGIGGGGLGTMSSII 143
Query: 431 VSEIAHDSIRGGLTAFSSSGYIIGLLTSYILGGKLTYQQVVYTHLGFSVMTMLLLTLL 604
S+I RG ++ + IG LGG + + T F V +L T+L
Sbjct: 144 SSDIVSLRERGTWQGITNIVWGIGGSLGGPLGGLIAQRWGWRTAFHFQVPMGILSTIL 201
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 268 RLQHFRKKIRYDILRSTLRDHMDNNISYG*CD 363
R+ F +KI D+ R R HM N +++ CD
Sbjct: 335 RISLFLEKIGIDMNRVRFRQHMSNEMAHYACD 366
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 201 GRYHYWAACLTSEHCWLVPSVDS 269
G ++YW T E WL SVD+
Sbjct: 277 GDWNYWFTISTEEKTWLSQSVDA 299
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 26.2 bits (55), Expect = 4.0
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -2
Query: 390 AIDMATSTRITLSVRDIIVHVIT*---GRPKNIVAYFLPKMLKASPQKGLANSAPKLGKL 220
+ID+A+S IT+ I T +PKN V+ +PKM + L + + LG +
Sbjct: 225 SIDLASSNDITVIESTIAPQQATTHPPSQPKNAVSVPIPKMDSTDSKGELPSESLVLGTV 284
Query: 219 PSS 211
P +
Sbjct: 285 PDN 287
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 227 ASCPVVISPTQTSACPKVLN 168
A+C V PT+ + CPK LN
Sbjct: 222 AACRFVHEPTRKTICPKFLN 241
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 323 VITWTIISLTDNVILVLVAMSIAGVGVAGQNVAI 424
+IT T+++ T VILV+ + + + G N +I
Sbjct: 301 MITPTVVTTTPMVILVMAVVMETTINIVGNNDSI 334
>SPAC607.05 |rpn9||19S proteasome regulatory subunit
Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 164 SNSTLLDRPMSAWEISLLGSLPNFGALLASP 256
S++ L++R + ++LG + NFG LL P
Sbjct: 195 SHTELVERAVDLSVAAILGDIYNFGELLLHP 225
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 201 GRYHYWAACLTSE 239
GRY WA+CL SE
Sbjct: 480 GRYSKWASCLESE 492
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,821
Number of Sequences: 5004
Number of extensions: 60961
Number of successful extensions: 161
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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