Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3g08
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.82 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   1.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   1.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 266  VHRRD*PTVLRS*ASCPVVISPTQTS 189
            +H RD P VLR+    PVV+     S
Sbjct: 1099 LHHRDLPCVLRASTPAPVVLEAVHAS 1124


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 161 RSLRSCKTXMXIYNRFDMPITKCIALPVI 75
           R L+SC T +     + +PITK  A+ V+
Sbjct: 142 RGLKSCHTGVGRNVGYKIPITKLTAMGVL 170


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 161 RSLRSCKTXMXIYNRFDMPITKCIALPVI 75
           R L+SC T +     + +PITK  A+ V+
Sbjct: 142 RGLKSCHTGVGRNVGYKIPITKLTAMGVL 170


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 161 RSLRSCKTXMXIYNRFDMPITKCIALPVI 75
           R L+SC T +     + +PITK  A+ V+
Sbjct: 142 RGLKSCHTGVGRNVGYKIPITKLTAMGVL 170


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 508 DVIHLGRKTDVSTGCLYAFGVLSNDDAVVDL 600
           +V    R+T+   G LYA    SN++ +VDL
Sbjct: 488 NVFAFSRETE-DNGSLYAILNFSNEEQIVDL 517


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 508 DVIHLGRKTDVSTGCLYAFGVLSNDDAVVDL 600
           +V    R+T+   G LYA    SN++ +VDL
Sbjct: 488 NVFAFSRETE-DNGSLYAILNFSNEEQIVDL 517


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 114 KPVIYAHGRLTRPQTSSPIQH 176
           +P +Y   R   P+T  PI+H
Sbjct: 66  QPSVYPLLRFENPETHHPIRH 86


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +2

Query: 176 LLDRPMSAWEISLLGSL 226
           ++DR +  WE+++L S+
Sbjct: 120 IVDRDVPTWEVNILKSI 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,145
Number of Sequences: 438
Number of extensions: 4429
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)