Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3g07
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch...    32   0.075
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    28   1.6  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    28   1.6  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    27   2.8  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   8.6  

>SPCC1259.06 |||transcription factor TFIID complex subunit 8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 222

 Score = 32.3 bits (70), Expect = 0.075
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 216 NLPRLPVPKLETTLNKYLKTVRPHLNDQ 299
           NL  +P+  L+T L KYLK + P +ND+
Sbjct: 62  NLLNIPMSSLQTELEKYLKPLPPAINDE 89


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 156 TCCHQITSNYVSAKYSTNVQNLPRLPVPKLETTLNKYLK--TVRPHLNDQEYEITK 317
           T C  ++S ++  K  +  Q+LP  P P   ++ N  L+     P  N+Q+  I K
Sbjct: 401 TTCSNLSSPHIKRKSRSPPQSLPSTPFPTSSSSTNGTLEPNANSPKKNEQDAWIAK 456


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 937

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 192  AKYSTNVQNLPRLPVPKLET-TLNKYLKTVRPHLNDQEYEITKSLVKDFISE 344
            ++Y+ N+Q++       +E   L + LK   P LN +E+E   +L +DF S+
Sbjct: 866  SRYNQNMQSMSDSKSVVIEDYMLMEALKKNSPSLNSEEFEHLSNLYRDFRSK 917


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 135 GYLLEPYTCCHQITSNYVSAKYSTNVQ-NLPRLPVPKLETTLNKYLKTVR 281
           G+ +  Y C  +I  N+ S+ Y      N+  L + K+E+T NK +K  +
Sbjct: 21  GFGIHQYICT-EILENFKSSTYVVITDSNIAPLYLEKIESTFNKSIKDAK 69


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
 Frame = +3

Query: 291  NDQEYEITKSLVKDFISEGS--TGQKLQSL-----LENRAEHHSNWLEQWWLNT 431
            N+Q   I++SL+KD  SEGS  T + L+S      +E  A    ++ E  W  T
Sbjct: 949  NEQAQSISRSLIKD--SEGSINTNETLESTSIVNEIEESAVQTKSYSESMWNKT 1000


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,890
Number of Sequences: 5004
Number of extensions: 59199
Number of successful extensions: 185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)