Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3g07
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0105 + 19096185-19096193,19096534-19097253                       31   0.73 
07_01_1185 + 11256857-11257330                                         29   5.2  
03_06_0489 - 34284301-34284336,34285104-34285227,34285307-342853...    29   5.2  
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    28   6.8  
02_04_0086 + 19610899-19610992,19613399-19613652,19613744-196139...    28   9.0  

>11_05_0105 + 19096185-19096193,19096534-19097253
          Length = 242

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 673 FSQGILHVPKIFLY*DMSRGFFPIIS 596
           F +G+L VPKIFLY D  R F  +++
Sbjct: 88  FERGVLRVPKIFLYDDAERMFLNLMA 113


>07_01_1185 + 11256857-11257330
          Length = 157

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 336 ISEGSTGQKLQSLLENRAEHHSNWLEQWW 422
           I  G T +++  LL + A H + W   WW
Sbjct: 95  IHRGETKRRIDGLLADLALHKAGWRRWWW 123


>03_06_0489 -
           34284301-34284336,34285104-34285227,34285307-34285371,
           34285472-34285555,34285661-34285789,34285887-34285976,
           34286116-34286250,34286939-34286984,34287119-34287225,
           34287355-34287412,34287524-34287765
          Length = 371

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +3

Query: 159 CCHQITSNYVSAKYSTNVQNLPRLPVPKLETTLNKYLKTVRPHLNDQEYEITKSLVK--D 332
           C H +    VSA +  +  +L ++  P +     KY+  + P  N +E+ + ++L +  +
Sbjct: 78  CTHSLERTEVSAAFFEDPNSLNKVRCPSIYDPAEKYISLIIPAYN-EEHRLPEALTETLN 136

Query: 333 FISEGSTGQK 362
           ++ + S  +K
Sbjct: 137 YLKQRSAVEK 146


>12_01_0798 +
           7314885-7314953,7315324-7315387,7315489-7315677,
           7316430-7316625,7316727-7316953,7317177-7318134,
           7320104-7321307,7321517-7321876,7321965-7323195,
           7323334-7323599,7323738-7326335
          Length = 2453

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = -1

Query: 222 VNFGRL*NIWQKHSCLLFDGNRYKVLINILCRHSL 118
           ++F ++  + +K+S +L  GNRYK  ++  C+H+L
Sbjct: 434 ISFSKI-TVPEKYS-ILIRGNRYKEALDFACKHNL 466


>02_04_0086 +
           19610899-19610992,19613399-19613652,19613744-19613955,
           19614059-19614320,19614432-19614728
          Length = 372

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 384 RAEHHSNWLEQWWLNTAYLEYRDPVVIFS 470
           R  HH+ WL  WW NT  L     V+ F+
Sbjct: 226 RVAHHAPWLAYWW-NTQKLFPASSVISFN 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,038,388
Number of Sequences: 37544
Number of extensions: 314390
Number of successful extensions: 709
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)