Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3g07
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.99 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   2.3  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   2.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
 Frame = +3

Query: 294 DQEYEITKSLVKDFIS----------EGSTGQKLQSLLENRAEHHSNW 407
           ++E E+ K+L+K  +S          EGS G  L++LL+   E  + W
Sbjct: 705 EEEKEVEKALLKPLLSLEDLVRFSTLEGSGGDSLRTLLQRGQETGAEW 752


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 177 SNYVSAKYSTNVQNLPRLPVP 239
           +NY S K   N+ N+ ++PVP
Sbjct: 316 NNYNSKKLYYNIINIEQIPVP 336


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 177 SNYVSAKYSTNVQNLPRLPVP 239
           +NY S K   N+ N+ ++PVP
Sbjct: 327 NNYNSKKLYYNIINIEQIPVP 347


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 255 LNKYLKTVRPHL 290
           LN  L TVRPHL
Sbjct: 248 LNDILLTVRPHL 259


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 255 LNKYLKTVRPHL 290
           LN  L TVRPHL
Sbjct: 248 LNDILLTVRPHL 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,726
Number of Sequences: 438
Number of extensions: 4048
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)