Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3f23
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.08c |pan6||pantoate-beta-alanine ligase |Schizosaccharo...    27   2.1  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   3.6  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    26   6.4  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   6.4  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   8.4  

>SPAC5H10.08c |pan6||pantoate-beta-alanine ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 283

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +2

Query: 56  ELNQCHFVPGRIQVCNTVLPQFIEPF 133
           EL++C F+P ++++C++     +EPF
Sbjct: 232 ELSRCRFIPDQLEICDSTT---LEPF 254


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 648 YKNGFVERYHVPIYLVLS--NCKFCFNLSI 731
           Y+NG  + +HVP +++    N K C   SI
Sbjct: 255 YRNGVSQNWHVPCHMIYKFWNVKLCQKTSI 284


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 80  PGRIQVCNTVLPQFIEPFLIMGYSAKESSVVDFCE 184
           P RI++ NT++  F+    + G S    S+ + CE
Sbjct: 34  PIRIRIINTIIISFMTMLCMYGSSVFMPSIPELCE 68


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 146 YSAKESSVVDFCESKTESLSNWVRQVKNKSLTAKTKRKRDLRVIAILSH 292
           ++A   S VDF    T+SLS       N S+T  + +   + +    SH
Sbjct: 524 FAASRPSSVDFMSQSTDSLSKNDTTASNGSMTPSSSQNNSVIIDIPRSH 572


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 72  ILC-QVGYRCVILYYHNLLSPF**WATVPKNLQLLTFVKVKQNLYRTGFDKLKISLS 239
           I+C Q   RC+  YYHNL      +  VP    L T +K+    Y T  +++ + +S
Sbjct: 347 IICHQAILRCIYGYYHNLSLEELPFINVP----LHTIIKLTPMTYETIEERVTVPIS 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,860
Number of Sequences: 5004
Number of extensions: 63687
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)