Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3f23
(732 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY061287-1|AAL28835.1| 167|Drosophila melanogaster LD20362p pro... 50 3e-06
AE014296-55|AAF47358.2| 167|Drosophila melanogaster CG33229-PA ... 50 3e-06
BT011339-1|AAR96131.1| 465|Drosophila melanogaster RH62603p pro... 31 1.2
AY051941-1|AAK93365.1| 565|Drosophila melanogaster LD41932p pro... 31 1.2
AF016835-1|AAC26144.1| 416|Drosophila melanogaster ribosomal pr... 31 1.2
AE014298-1695|AAF48098.2| 1168|Drosophila melanogaster CG32662-P... 31 1.2
AE014297-1265|AAF54609.1| 403|Drosophila melanogaster CG4863-PE... 31 1.2
AE014297-1264|AAN13496.1| 403|Drosophila melanogaster CG4863-PB... 31 1.2
AE014297-1262|AAF54610.2| 416|Drosophila melanogaster CG4863-PA... 31 1.2
U07652-1|AAA20518.1| 390|Drosophila melanogaster La/SS-B protein. 29 8.6
L32988-1|AAA21776.1| 390|Drosophila melanogaster La ribonucleop... 29 8.6
AY129432-1|AAM76174.1| 744|Drosophila melanogaster GM04379p pro... 29 8.6
AY089639-1|AAL90377.1| 595|Drosophila melanogaster RE56519p pro... 29 8.6
AY075257-1|AAL68124.1| 390|Drosophila melanogaster AT22034p pro... 29 8.6
AE014297-2081|AAN13676.1| 744|Drosophila melanogaster CG17604-P... 29 8.6
AE014297-2080|AAN13675.1| 744|Drosophila melanogaster CG17604-P... 29 8.6
AE014297-2079|AAF55223.1| 744|Drosophila melanogaster CG17604-P... 29 8.6
AE014134-3230|AAN11073.1| 390|Drosophila melanogaster CG10922-P... 29 8.6
AE014134-3229|AAF53885.1| 390|Drosophila melanogaster CG10922-P... 29 8.6
>AY061287-1|AAL28835.1| 167|Drosophila melanogaster LD20362p
protein.
Length = 167
Score = 50.0 bits (114), Expect = 3e-06
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 18/122 (14%)
Frame = +2
Query: 173 DFCES--KTESLSNWVR--QVKNKSLTAKTKRK-RDLRVIAILSHSLVRAETELVMKQRE 337
D C++ ++L++WVR +VK + + K + DLRV AILS +L+ AE EL KQ+E
Sbjct: 6 DECDAAENPKTLTDWVRNFRVKRQKMRRKLRGAGSDLRVNAILSTALLHAEHELRRKQQE 65
Query: 338 RARKWAQMQ---VDLGLSNKEEEI----------ARRHREKIDYLWKNDLSGLDSFFKEL 478
R +W +Q V G ++ + A E LW ++LS LDSF + L
Sbjct: 66 RFSRWLDIQTRFVPHGRTHCASDAYSAVATSTTKAAAEAEAESNLWSSELSSLDSFMRSL 125
Query: 479 DN 484
+
Sbjct: 126 SS 127
>AE014296-55|AAF47358.2| 167|Drosophila melanogaster CG33229-PA
protein.
Length = 167
Score = 50.0 bits (114), Expect = 3e-06
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 18/122 (14%)
Frame = +2
Query: 173 DFCES--KTESLSNWVR--QVKNKSLTAKTKRK-RDLRVIAILSHSLVRAETELVMKQRE 337
D C++ ++L++WVR +VK + + K + DLRV AILS +L+ AE EL KQ+E
Sbjct: 6 DECDAAENPKTLTDWVRNFRVKRQKMRRKLRGAGSDLRVNAILSTALLHAEHELRRKQQE 65
Query: 338 RARKWAQMQ---VDLGLSNKEEEI----------ARRHREKIDYLWKNDLSGLDSFFKEL 478
R +W +Q V G ++ + A E LW ++LS LDSF + L
Sbjct: 66 RFSRWLDIQTRFVPHGRTHCASDAYSAVATSTTKAAAEAEAESNLWSSELSSLDSFMRSL 125
Query: 479 DN 484
+
Sbjct: 126 SS 127
>BT011339-1|AAR96131.1| 465|Drosophila melanogaster RH62603p
protein.
Length = 465
Score = 31.5 bits (68), Expect = 1.2
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +2
Query: 191 TESLSNWVRQVKNKSLTAKTKRK-RDLRVIAILSHSLVRAETELVMKQRERARKWAQMQV 367
T++ W + KS+ ++ R +VI +++HS +R ++KQR++ ++Q+
Sbjct: 142 TKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIR-----LIKQRQKKAHVMEIQL 196
Query: 368 DLGLSNKEEEIARRHREK 421
+ G + + AR H EK
Sbjct: 197 NGGSIEDKVKWAREHLEK 214
>AY051941-1|AAK93365.1| 565|Drosophila melanogaster LD41932p
protein.
Length = 565
Score = 31.5 bits (68), Expect = 1.2
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 218 QVKNKSLTAKTKRK-RDLRVIAILSHSLVRAETELVMKQRERARKWAQMQVDLGLSNKEE 394
++K K K K K R+ ++ E E +K++ERA K ++ ++ L KEE
Sbjct: 56 KLKEKERQEKLKEKEREEKLKRETEERQREKEREEKLKEKERAEKLKDLEKEVKLKEKEE 115
Query: 395 EIARRHRE 418
++ + +E
Sbjct: 116 QLKEKEKE 123
>AF016835-1|AAC26144.1| 416|Drosophila melanogaster ribosomal
protein L3 protein.
Length = 416
Score = 31.5 bits (68), Expect = 1.2
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +2
Query: 191 TESLSNWVRQVKNKSLTAKTKRK-RDLRVIAILSHSLVRAETELVMKQRERARKWAQMQV 367
T++ W + KS+ ++ R +VI +++HS +R ++KQR++ ++Q+
Sbjct: 131 TKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIR-----LIKQRQKKAHVMEIQL 185
Query: 368 DLGLSNKEEEIARRHREK 421
+ G + + AR H EK
Sbjct: 186 NGGSIEDKVKWAREHLEK 203
>AE014298-1695|AAF48098.2| 1168|Drosophila melanogaster CG32662-PA
protein.
Length = 1168
Score = 31.5 bits (68), Expect = 1.2
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 218 QVKNKSLTAKTKRK-RDLRVIAILSHSLVRAETELVMKQRERARKWAQMQVDLGLSNKEE 394
++K K K K K R+ ++ E E +K++ERA K ++ ++ L KEE
Sbjct: 659 KLKEKERQEKLKEKEREEKLKRETEERQREKEREEKLKEKERAEKLKDLEKEVKLKEKEE 718
Query: 395 EIARRHRE 418
++ + +E
Sbjct: 719 QLKEKEKE 726
>AE014297-1265|AAF54609.1| 403|Drosophila melanogaster CG4863-PE,
isoform E protein.
Length = 403
Score = 31.5 bits (68), Expect = 1.2
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +2
Query: 191 TESLSNWVRQVKNKSLTAKTKRK-RDLRVIAILSHSLVRAETELVMKQRERARKWAQMQV 367
T++ W + KS+ ++ R +VI +++HS +R ++KQR++ ++Q+
Sbjct: 118 TKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIR-----LIKQRQKKAHVMEIQL 172
Query: 368 DLGLSNKEEEIARRHREK 421
+ G + + AR H EK
Sbjct: 173 NGGSIEDKVKWAREHLEK 190
>AE014297-1264|AAN13496.1| 403|Drosophila melanogaster CG4863-PB,
isoform B protein.
Length = 403
Score = 31.5 bits (68), Expect = 1.2
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +2
Query: 191 TESLSNWVRQVKNKSLTAKTKRK-RDLRVIAILSHSLVRAETELVMKQRERARKWAQMQV 367
T++ W + KS+ ++ R +VI +++HS +R ++KQR++ ++Q+
Sbjct: 118 TKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIR-----LIKQRQKKAHVMEIQL 172
Query: 368 DLGLSNKEEEIARRHREK 421
+ G + + AR H EK
Sbjct: 173 NGGSIEDKVKWAREHLEK 190
>AE014297-1262|AAF54610.2| 416|Drosophila melanogaster CG4863-PA,
isoform A protein.
Length = 416
Score = 31.5 bits (68), Expect = 1.2
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +2
Query: 191 TESLSNWVRQVKNKSLTAKTKRK-RDLRVIAILSHSLVRAETELVMKQRERARKWAQMQV 367
T++ W + KS+ ++ R +VI +++HS +R ++KQR++ ++Q+
Sbjct: 131 TKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIR-----LIKQRQKKAHVMEIQL 185
Query: 368 DLGLSNKEEEIARRHREK 421
+ G + + AR H EK
Sbjct: 186 NGGSIEDKVKWAREHLEK 203
>U07652-1|AAA20518.1| 390|Drosophila melanogaster La/SS-B protein.
Length = 390
Score = 28.7 bits (61), Expect = 8.6
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 308 ETELVMKQRERARKWAQMQVDLGLSNKEEEIARRHREK 421
+ ++V K+RE RKW QVD L K+EE A+++ ++
Sbjct: 213 QEKIVYKERELLRKW---QVDY-LKEKQEEYAQKNEKR 246
>L32988-1|AAA21776.1| 390|Drosophila melanogaster La
ribonucleoprotein protein.
Length = 390
Score = 28.7 bits (61), Expect = 8.6
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 308 ETELVMKQRERARKWAQMQVDLGLSNKEEEIARRHREK 421
+ ++V K+RE RKW QVD L K+EE A+++ ++
Sbjct: 213 QEKIVYKERELLRKW---QVDY-LKEKQEEYAQKNEKR 246
>AY129432-1|AAM76174.1| 744|Drosophila melanogaster GM04379p
protein.
Length = 744
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/85 (21%), Positives = 40/85 (47%)
Frame = +2
Query: 131 FLIMGYSAKESSVVDFCESKTESLSNWVRQVKNKSLTAKTKRKRDLRVIAILSHSLVRAE 310
+LI + +S++++ K E S S ++++ ++ ++ L + R E
Sbjct: 562 YLISDHDTLKSAIINLQAEKKEIESELSTAKVKFSEELQSQKDNLMKKVSELELEIKRKE 621
Query: 311 TELVMKQRERARKWAQMQVDLGLSN 385
TEL+ +RE+ + A +Q + N
Sbjct: 622 TELIELEREKNNEMAVLQFKMNRIN 646
>AY089639-1|AAL90377.1| 595|Drosophila melanogaster RE56519p
protein.
Length = 595
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/85 (21%), Positives = 40/85 (47%)
Frame = +2
Query: 131 FLIMGYSAKESSVVDFCESKTESLSNWVRQVKNKSLTAKTKRKRDLRVIAILSHSLVRAE 310
+LI + +S++++ K E S S ++++ ++ ++ L + R E
Sbjct: 413 YLISDHDTLKSAIINLQAEKKEIESELSTAKVKFSEELQSQKDNLMKKVSELELEIKRKE 472
Query: 311 TELVMKQRERARKWAQMQVDLGLSN 385
TEL+ +RE+ + A +Q + N
Sbjct: 473 TELIELEREKNNEMAVLQFKMNRIN 497
>AY075257-1|AAL68124.1| 390|Drosophila melanogaster AT22034p
protein.
Length = 390
Score = 28.7 bits (61), Expect = 8.6
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 308 ETELVMKQRERARKWAQMQVDLGLSNKEEEIARRHREK 421
+ ++V K+RE RKW QVD L K+EE A+++ ++
Sbjct: 213 QEKIVYKERELLRKW---QVDY-LKEKQEEYAQKNEKR 246
>AE014297-2081|AAN13676.1| 744|Drosophila melanogaster CG17604-PC,
isoform C protein.
Length = 744
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/85 (21%), Positives = 40/85 (47%)
Frame = +2
Query: 131 FLIMGYSAKESSVVDFCESKTESLSNWVRQVKNKSLTAKTKRKRDLRVIAILSHSLVRAE 310
+LI + +S++++ K E S S ++++ ++ ++ L + R E
Sbjct: 562 YLISDHDTLKSAIINLQAEKKEIESELSTAKVKFSEELQSQKDNLMKKVSELELEIKRKE 621
Query: 311 TELVMKQRERARKWAQMQVDLGLSN 385
TEL+ +RE+ + A +Q + N
Sbjct: 622 TELIELEREKNNEMAVLQFKMNRIN 646
>AE014297-2080|AAN13675.1| 744|Drosophila melanogaster CG17604-PB,
isoform B protein.
Length = 744
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/85 (21%), Positives = 40/85 (47%)
Frame = +2
Query: 131 FLIMGYSAKESSVVDFCESKTESLSNWVRQVKNKSLTAKTKRKRDLRVIAILSHSLVRAE 310
+LI + +S++++ K E S S ++++ ++ ++ L + R E
Sbjct: 562 YLISDHDTLKSAIINLQAEKKEIESELSTAKVKFSEELQSQKDNLMKKVSELELEIKRKE 621
Query: 311 TELVMKQRERARKWAQMQVDLGLSN 385
TEL+ +RE+ + A +Q + N
Sbjct: 622 TELIELEREKNNEMAVLQFKMNRIN 646
>AE014297-2079|AAF55223.1| 744|Drosophila melanogaster CG17604-PA,
isoform A protein.
Length = 744
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/85 (21%), Positives = 40/85 (47%)
Frame = +2
Query: 131 FLIMGYSAKESSVVDFCESKTESLSNWVRQVKNKSLTAKTKRKRDLRVIAILSHSLVRAE 310
+LI + +S++++ K E S S ++++ ++ ++ L + R E
Sbjct: 562 YLISDHDTLKSAIINLQAEKKEIESELSTAKVKFSEELQSQKDNLMKKVSELELEIKRKE 621
Query: 311 TELVMKQRERARKWAQMQVDLGLSN 385
TEL+ +RE+ + A +Q + N
Sbjct: 622 TELIELEREKNNEMAVLQFKMNRIN 646
>AE014134-3230|AAN11073.1| 390|Drosophila melanogaster CG10922-PB,
isoform B protein.
Length = 390
Score = 28.7 bits (61), Expect = 8.6
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 308 ETELVMKQRERARKWAQMQVDLGLSNKEEEIARRHREK 421
+ ++V K+RE RKW QVD L K+EE A+++ ++
Sbjct: 213 QEKIVYKERELLRKW---QVDY-LKEKQEEYAQKNEKR 246
>AE014134-3229|AAF53885.1| 390|Drosophila melanogaster CG10922-PA,
isoform A protein.
Length = 390
Score = 28.7 bits (61), Expect = 8.6
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 308 ETELVMKQRERARKWAQMQVDLGLSNKEEEIARRHREK 421
+ ++V K+RE RKW QVD L K+EE A+++ ++
Sbjct: 213 QEKIVYKERELLRKW---QVDY-LKEKQEEYAQKNEKR 246
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,785,663
Number of Sequences: 53049
Number of extensions: 685341
Number of successful extensions: 1746
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1744
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3293648160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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