Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3f23
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73427-4|CAA97802.3|  601|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z72513-1|CAA96669.1|  260|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z95559-6|CAB63363.1|  187|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF099919-3|AAC68801.2|  862|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z73427-4|CAA97802.3|  601|Caenorhabditis elegans Hypothetical
           protein F58B3.4 protein.
          Length = 601

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +2

Query: 263 DLRVIAILSHSLVRAETELVMKQRERARKWAQMQVDLGLSNKEEEIARRHREKID-YLWK 439
           D R  A L+        ++ M+ R++ +      +DL    ++EE+    +EKI     K
Sbjct: 40  DKRFAAALTDERFSTRAKVDMRGRKQKKTVGNSMLDLYELEEDEEVQPLKKEKISKKTTK 99

Query: 440 NDLSGLDSFFKELDNVKPILK 502
           ++   LD FF E D+ +  L+
Sbjct: 100 DEDDELDDFFDEKDDDEDALE 120


>Z72513-1|CAA96669.1|  260|Caenorhabditis elegans Hypothetical
           protein T04F3.2 protein.
          Length = 260

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = +2

Query: 179 CESKTESLSNWVRQVKNKSLTAKTKRKRDLR-VIAILSHSLVRAETELVMKQRERARKWA 355
           CE +T + +   ++V+  +   + KR R LR +++ L   ++ +        R+ A +W 
Sbjct: 119 CE-ETPTTTVAPKRVRRNNRCKEKKRTRFLRRLVSTLKSEMIMSGINATKVSRDSAIRWK 177

Query: 356 QMQVDLGLSNKEEEIARRHREKIDYLWKNDLSGLDSFFKELD 481
             Q+++  +N  E    +  + +   WKN      + FK  D
Sbjct: 178 FNQLNINHNNVLERSEWKPFKSVLLEWKNVRQCSRNLFKTCD 219


>Z95559-6|CAB63363.1|  187|Caenorhabditis elegans Hypothetical
           protein Y41E3.13 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = -2

Query: 656 IFVAGSNHAPAATKMAADGCRPTRNAMGL*FKKHPTYITDSNTCSKL 516
           +F   S H       AADG  P     G+  K    Y+    TCS L
Sbjct: 115 VFFVSSAHTDGQAYHAADGLSPWTTKSGVGEKTKRMYMRTERTCSTL 161


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical protein
            T06E4.1 protein.
          Length = 1295

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +2

Query: 218  QVKNKSLTAKTKRKRD--LRVIAILSHSLVRAETELVMKQRERARKWAQMQVDLGLSNKE 391
            Q  ++S+     +++D  LR++  L   +   E      Q+    +  Q+Q+DL    + 
Sbjct: 795  QEVSRSVVDAAVQEKDGLLRLVDTLKLKIEDTEKSAQDLQQSSVEEIKQLQLDLQNFKQN 854

Query: 392  EEIARRHREKIDYLWKNDLSGLDSFFKELDN 484
             E+     EK++   K D+  L S  +EL +
Sbjct: 855  AEVLESLNEKLNSSHKRDMVALASQLEELQH 885


>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical protein
            C56E6.6 protein.
          Length = 1102

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 232  VSHSQDKEKARFESNRHLESLSSASRD*ARYETKRTCQEVGSD 360
            +SH  DK +     + +LES +SA+ +   Y+TK T      D
Sbjct: 1032 ISHDFDKVECADAQSSNLESFASAANELFSYKTKMTLLSKSED 1074


>AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical
           protein Y105C5A.1 protein.
          Length = 767

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 335 ERARKWAQMQVDLGLSNKEEEIARRHREKIDYLWK-NDLS 451
           E+   W+Q + DL  +   EE     RE+ +  WK NDLS
Sbjct: 555 EKIYHWSQKEEDLNRTLSREEFEELVREEKNKKWKNNDLS 594


>AF099919-3|AAC68801.2|  862|Caenorhabditis elegans Hypothetical
           protein F40G9.9 protein.
          Length = 862

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +2

Query: 311 TELVMKQRERARKWAQMQVDLGLSNKEEEIARRHREKIDYLWKNDLSGLDSFFKELD 481
           + L + +R R+      ++ L +++K+      H E I+Y +  + SG++  FK  D
Sbjct: 101 SHLAIDKRLRSIHRPTSEIHLNINSKDFTTCLPHIENINYAFLKNTSGINRRFKSAD 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,941,328
Number of Sequences: 27780
Number of extensions: 358456
Number of successful extensions: 1018
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)