Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3f23
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.8  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   9.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 413 GDAWRFPPLCW 381
           G+ WRFP LC+
Sbjct: 40  GNLWRFPYLCY 50


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 413 GDAWRFPPLCW 381
           G+ WRFP LC+
Sbjct: 93  GNLWRFPYLCY 103


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 535 ESVIYVGCFLNYSPIAFRVGLHPSAAILVAAG 630
           E++ YV    N SP+  RVG+H  A +    G
Sbjct: 350 EAIKYVQQTTN-SPVDMRVGIHTGAVLAGVLG 380


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 552 RMFFKLQSHCVSRGSASVGRHLGRRWGVVAASYKNG 659
           R +F++ + CVSR S  + R+     G   +S +NG
Sbjct: 23  RDWFRISAGCVSRISNRISRNRVLLRGQCISSRRNG 58


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 416 PGDAWRFPPLCWTIRGQLASEPTSWHVLFVS 324
           P D  ++P     ++GQ+   P S  +LFVS
Sbjct: 363 PQDVDKYPAEGLEMKGQMVHCPESDSILFVS 393


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 170 VDFCESKTESLSNWVRQV 223
           V F    T ++S WVRQV
Sbjct: 336 VHFRSPSTHNMSPWVRQV 353


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 452 H*DHSSTNNRFFPGDAWRF-PPL 387
           H   S++  RF P +A+RF PPL
Sbjct: 377 HIGPSTSFPRFIPPNAYRFRPPL 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,036
Number of Sequences: 438
Number of extensions: 4443
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)