Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3f19
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   3.3  
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    26   5.7  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    25   7.6  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    25   10.0 

>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 84  NHLRCFCSIIC*NSGLFTVKLNKTTTLGWSGVLKSAILGSKST 212
           N+ RCF  II   + +F V  N    +  S +L + +  SKST
Sbjct: 157 NYTRCFRQIILLLTNMFRVGFNLFDEMEVSSMLANCVWVSKST 199


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 111 LSNKNTSNDLDSNCQRTKAIIHLDFY 34
           +SNK  S  L    QR  A IH+D Y
Sbjct: 214 ISNKRLSTKLPGRLQRALASIHVDNY 239


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 66  VDSSSLNHLRCFCSIIC*NSGLFTVKLNKTTTLGWSGVLKSAILGSKSTP 215
           +D+S +NHLRC  ++    + L   K  +   +   G     ++G++S P
Sbjct: 66  LDTSCINHLRCGTTVA--TNALLERKGERCAFITTKGFKDGLLIGNQSRP 113


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -3

Query: 424 LGVGSRHGNIFIFGIQKGLIVY 359
           L  G+  GN++I+ ++ G ++Y
Sbjct: 91  LAAGTEKGNLYIWSLKSGALIY 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,960
Number of Sequences: 5004
Number of extensions: 49475
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)