Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3f19
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   2.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.1  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 57  LWCVDSSSLNHLRCFCS 107
           LW +DS  +N+++  CS
Sbjct: 139 LWVLDSGLINNIQLMCS 155


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 387 KIKILPCLLPTP 422
           +++ LPCLLP P
Sbjct: 622 ELRTLPCLLPRP 633


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 387 KIKILPCLLPTP 422
           +++ LPCLLP P
Sbjct: 590 ELRTLPCLLPRP 601


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -1

Query: 117 NKLSNKNTSNDLDSNCQR 64
           N  +N N +N+ ++NC++
Sbjct: 336 NNYNNNNYNNNYNNNCKK 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,397
Number of Sequences: 438
Number of extensions: 3482
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)