Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3f14
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical p...   374   e-104
U23139-10|AAN65328.1|  558|Caenorhabditis elegans Biotin protein...    30   1.5  
U23139-9|AAN65327.1|  632|Caenorhabditis elegans Biotin protein ...    30   1.5  
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ...    30   1.5  
AY601658-1|AAS98223.1|  558|Caenorhabditis elegans biotin protei...    30   1.5  
AY601657-1|AAS98222.1|  558|Caenorhabditis elegans biotin protei...    30   1.5  
AY601656-1|AAS98221.1|  632|Caenorhabditis elegans biotin protei...    30   1.5  
AF025454-9|AAK68371.1|  331|Caenorhabditis elegans Serpentine re...    30   1.5  
AC024881-7|AAK71417.1|  310|Caenorhabditis elegans Serpentine re...    29   3.5  
AL032660-1|CAA21752.1|  711|Caenorhabditis elegans Hypothetical ...    28   6.0  

>Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical
           protein Y57G11C.15 protein.
          Length = 473

 Score =  374 bits (919), Expect = e-104
 Identities = 172/193 (89%), Positives = 188/193 (97%)
 Frame = +2

Query: 161 MGIRFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 340
           MGI+FLE +KPFC  +PE++KPERKIQFREK+LWTAITLF+FLVCCQIPLFGIMS+DSAD
Sbjct: 1   MGIKFLEFVKPFCGFVPEVSKPERKIQFREKMLWTAITLFVFLVCCQIPLFGIMSTDSAD 60

Query: 341 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 520
           PFYW+RVI+ASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61  PFYWLRVIMASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120

Query: 521 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 700
           MVITVGQAIVYVM+G+YGEPSEIGAG+CLLI++QL +AGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MVITVGQAIVYVMSGLYGEPSEIGAGICLLIVVQLVIAGLIVLLLDELLQKGYGLGSGIS 180

Query: 701 LFIATNICETXVW 739
           LFIATNICET VW
Sbjct: 181 LFIATNICETIVW 193


>U23139-10|AAN65328.1|  558|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform c protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -2

Query: 712 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFT 581
           +NK +DT  + + FLE+ +++    T   + + +++   G NFT
Sbjct: 116 NNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 159


>U23139-9|AAN65327.1|  632|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform b protein.
          Length = 632

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -2

Query: 712 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFT 581
           +NK +DT  + + FLE+ +++    T   + + +++   G NFT
Sbjct: 190 NNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 233


>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform a protein.
          Length = 1051

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -2

Query: 712 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFT 581
           +NK +DT  + + FLE+ +++    T   + + +++   G NFT
Sbjct: 609 NNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 652


>AY601658-1|AAS98223.1|  558|Caenorhabditis elegans biotin protein
           ligase, holocarboxylasesynthetase (62.5 kD) alternative
           variant d protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -2

Query: 712 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFT 581
           +NK +DT  + + FLE+ +++    T   + + +++   G NFT
Sbjct: 116 NNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 159


>AY601657-1|AAS98222.1|  558|Caenorhabditis elegans biotin protein
           ligase, holocarboxylasesynthetase (62.5 kD) alternative
           variant c protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -2

Query: 712 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFT 581
           +NK +DT  + + FLE+ +++    T   + + +++   G NFT
Sbjct: 116 NNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 159


>AY601656-1|AAS98221.1|  632|Caenorhabditis elegans biotin protein
           ligase, holocarboxylasesynthetase (70.9 kD) alternative
           variant b protein.
          Length = 632

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -2

Query: 712 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFT 581
           +NK +DT  + + FLE+ +++    T   + + +++   G NFT
Sbjct: 190 NNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 233


>AF025454-9|AAK68371.1|  331|Caenorhabditis elegans Serpentine
           receptor, class i protein61 protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +2

Query: 215 IAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVIL 367
           IAK  RK      V+W  +  FI  +C  + LF     D      +IRV L
Sbjct: 119 IAKTLRKYIMPRWVVWCVLGFFIVYICAVVGLFSQTRRDEMHQMEYIRVNL 169


>AC024881-7|AAK71417.1|  310|Caenorhabditis elegans Serpentine
           receptor, class sx protein3 protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 176 LEVIKPFCSI--LPEIAKPERKIQFREKVLWTAITLFIFLVCCQ 301
           L V   FC +  LP        IQ R  + + AI+L+IF +C Q
Sbjct: 52  LSVSHIFCLLFELPNAVLLFTGIQLRRNICFPAISLYIFFICAQ 95


>AL032660-1|CAA21752.1|  711|Caenorhabditis elegans Hypothetical
           protein Y70G10A.2 protein.
          Length = 711

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 628 KQLYD--NEEAHSGTNFTGFTIHSSHYINN 545
           K +Y+   +EAH+ TNF    I  SHY NN
Sbjct: 679 KDIYELTRDEAHAQTNFMNSIILFSHYGNN 708


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,575,916
Number of Sequences: 27780
Number of extensions: 389160
Number of successful extensions: 1187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)