Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3f14
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          29   0.061
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      29   0.061
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.2  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 28.7 bits (61), Expect = 0.061
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 256 YFLSELNLTFWFRYFWQYTAERLNYFQK--SYSHF-DLLRFNYP 134
           Y+L   N T W+        +RLNYF +    +HF  +L  NYP
Sbjct: 197 YYLLAANYTGWYLTKHNVPEQRLNYFTEDVGLNHFYFMLNHNYP 240


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 28.7 bits (61), Expect = 0.061
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 256 YFLSELNLTFWFRYFWQYTAERLNYFQK--SYSHF-DLLRFNYP 134
           Y+L   N T W+        +RLNYF +    +HF  +L  NYP
Sbjct: 197 YYLLAANYTGWYLTKHNVPEQRLNYFTEDVGLNHFYFMLNHNYP 240


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = -2

Query: 712 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFTGFTIHSSHYIN 548
           + ++R    + IS L    +  HN   +K  Y+N+  ++  N+     + ++ IN
Sbjct: 71  TERERSREPKIISSLSN--KTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIIN 123


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
 Frame = -3

Query: 699 EIPEPNPYPFWSNSSSN------NTIRPATNSC 619
           E P+ NPYP W  +  N      N IR   ++C
Sbjct: 88  ESPKLNPYPNWEMNDINKIDSIINIIRVRVDAC 120


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 663 NSSSNNTIRPATNSCMIMRRHTPAPISLG 577
           N  +NN      N C++  + +P  ++LG
Sbjct: 473 NEGNNNMAATYMNECLLNIQKSPRTLTLG 501


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 250 LSELNLTFWFRYFW 209
           L +  L F+FR FW
Sbjct: 54  LMDFTLDFYFRQFW 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,056
Number of Sequences: 438
Number of extensions: 5306
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)